myRT

myRT report for GCA_009907725.1_ASM990772v1

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Seq: JAAASM010000216.1 Klebsiella pneumoniae strain 3682 3682_contig216, whole genome shotgun sequence (17341 bp)
Overview 1 RT 1: 2-2716 bp Neighborhood of RT #1 [2, 2716] RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 2-943 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26-557 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26-557 bp Feature: gene Location: 1599-2435 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2088-2259 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2088-2259 bp Feature: gene Location: 2465-2716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: JAAASM010000235.1 Klebsiella pneumoniae strain 3682 3682_contig235, whole genome shotgun sequence (2748 bp)
Overview 1 RT 1: 3-1835 bp Neighborhood of RT #1 [3, 2014] Arr-ms RVT-GII GIIM Feature: gene Location: 3-578 bp Feature: domain Description: Arr-ms Location: 186-492 bp Feature: domain Description: Arr-ms Location: 186-492 bp Feature: gene Location: 659-2014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953-1577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953-1577 bp Feature: domain Description: GIIM Note: maturase Location: 1616-1835 bp Feature: domain Description: GIIM Note: maturase Location: 1616-1835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arr-ms (pfam12120), RVT-GII, GIIM (pfam08388)

Seq: JAAASM010000027.1 Klebsiella pneumoniae strain 3682 3682_contig27, whole genome shotgun sequence (35142 bp)
Overview 1 RT 1: 14447-17521 bp Neighborhood of RT #1 [14447, 17526] PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 14447-14665 bp Feature: domain Description: PRK09678 Location: 14450-14648 bp Feature: domain Description: PRK09678 Location: 14450-14648 bp Feature: gene Location: 14912-15100 bp Feature: gene Location: 15069-15842 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 15204-15657 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 15204-15657 bp Feature: gene Location: 16457-16939 bp Feature: domain Description: SmpB Location: 16487-16931 bp Feature: domain Description: SmpB Location: 16487-1693 1 bp Feature: gene Location: 17050-17526 bp Feature: domain Description: PRK10724 Location: 17056-17521 bp Feature: domain Description: PRK10724 Location: 17056-17521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)