myRT

myRT report for GCA_009907835.1_ASM990783v1

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Seq: JAAASI010000139.1 Klebsiella pneumoniae strain 1337 1337_contig139, whole genome shotgun sequence (23598 bp)
Overview 1 RT 1: 4721-7991 bp Neighborhood of RT #1 [4721, 8005] RVT-GII PRK10276 Feature: gene Location: 4721-4936 bp Feature: gene Location: 5203-5433 bp Feature: gene Location: 5667-7178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6072-6786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6072-6786 bp Feature: gene Location: 7229-7462 bp Feature: gene Location: 7580-8005 bp Feature: domain Description: PRK10276 Location: 7583-7991 bp Feature: domain Description: PRK1 0276 Location: 7583-7991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JAAASI010000151.1 Klebsiella pneumoniae strain 1337 1337_contig151, whole genome shotgun sequence (368 bp)
Overview 1 RT 1: 3-366 bp Neighborhood of RT #1 [3, 365] RVT-Retrons Feature: gene Location: 3-365 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30-366 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30-366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JAAASI010000175.1 Klebsiella pneumoniae strain 1337 1337_contig175, whole genome shotgun sequence (455 bp)
Overview 1 RT 1: 1-145 bp Neighborhood of RT #1 [1, 453] RVT-Retrons Feature: gene Location: 1-453 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-145 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4-145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JAAASI010000009.1 Klebsiella pneumoniae strain 1337 1337_contig9, whole genome shotgun sequence (272194 bp)
Overview 1 RT 1: 264602-271470 bp Neighborhood of RT #1 [264602, 271472] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 264602-265330 bp Feature: domain Description: FimC Location: 264650-265313 bp Feature: domain Description: FimC Location: 264 650-265313 bp Feature: gene Location: 265362-267971 bp Feature: domain Description: FimD Location: 265419-267960 bp Feature: domain Description: FimD Location: 2654 19-267960 bp Feature: gene Location: 267971-270049 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268379-268823 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 268379-268823 bp Feature: gene Location: 270106-270546 bp Feature: domain Description: Integrase_1 Location: 270112-270328 bp Feature: domain Description: Integrase_1 Location: 270112-270328 bp Feature: gene Location: 270807-271472 bp Feature: domain Description: INT_P4_C Location: 270912-271470 bp Feature: domain Description: INT_P4 _C Location: 270912-2714 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)