myRT

myRT report for GCA_009908075.1_ASM990807v1

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Seq: JAAARU010000117.1 Escherichia coli strain 3467-2 Ec-3467-2_contig117, whole genome shotgun sequence (730 bp)
Overview 1 RT 1: 3-672 bp Neighborhood of RT #1 [3, 728] RVT-Retrons Feature: gene Location: 3-728 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 129-672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 29-672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JAAARU010000169.1 Escherichia coli strain 3467-2 Ec-3467-2_contig169, whole genome shotgun sequence (15644 bp)
Overview 1 RT 1: 6432-12463 bp Neighborhood of RT #1 [6432, 12463] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 6432-7352 bp Feature: domain Description: AbiEii Location: 6474-7215 bp Feature: domain Description: AbiEii Location: 6474-72 15 bp Feature: gene Location: 7339-8142 bp Feature: domain Description: AbiEi_3_N Location: 7372-7633 bp Feature: domain Description: AbiEi_3_N Location: 7372 -7633 bp Feature: domain Description: AbiEi_3 Location: 7645-8101 bp Feature: domain Description: AbiEi_3 Location: 7645-8101 bp Feature: gene Location: 8437-11646 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8965-9454 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8965-9454 bp Feature: domain Description: nitrilase Location: 10960-11557 bp Feature: domain Description: nitrilase Location: 10960-11557 bp Feature: gene Location: 11807-11947 bp Feature: domain Description: Phage_ASH Location: 11834-11927 bp Feature: domain Description: Phage_ASH Location: 11834-1192 7 bp Feature: gene Location: 11993-12463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JAAARU010000177.1 Escherichia coli strain 3467-2 Ec-3467-2_contig177, whole genome shotgun sequence (1497 bp)
Overview 1 RT 1: 98-1496 bp Neighborhood of RT #1 [98, 1495] PHA02517 RVT-GII Feature: gene Location: 98-577 bp Feature: domain Description: PHA02517 Location: 158-512 bp Feature: domain Description: PHA02517 Location: 158-512 bp Feature: gene Location: 1169-1495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1442-1496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1442-1496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: JAAARU010000229.1 Escherichia coli strain 3467-2 Ec-3467-2_contig229, whole genome shotgun sequence (27254 bp)
Overview 1 RT 1: 19453-23736 bp Neighborhood of RT #1 [19453, 23744] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 19453-20358 bp Feature: gene Location: 20496-20687 bp Feature: gene Location: 20844-21383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21174-21252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21174 -21252 bp Feature: gene Location: 21411-21932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21417-21699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214 17-21699 bp Feature: domain Description: GIIM Note: maturase Location: 21747-21927 bp Feature: domain Description: GIIM Note: maturase Location: 2174 7-21927 bp Feature: gene Location: 22254-22442 bp Feature: gene Location: 22482-23744 bp Feature: domain Description: YesM Location: 22995-23736 bp Feature: domain Description: YesM Location: 22995-23736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JAAARU010000319.1 Escherichia coli strain 3467-2 Ec-3467-2_contig319, whole genome shotgun sequence (7068 bp)
Overview 1 RT 1: 445-3628 bp Neighborhood of RT #1 [445, 3633] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 445-654 bp Feature: gene Location: 789-2690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056-1887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105 6-1887 bp Feature: domain Description: Intron_maturas2 Location: 2001-2259 bp Feature: domain Description: Intron_maturas2 Location: 2001-225 9 bp Feature: domain Description: HNHc Note: nucleases Location: 2433-2595 bp Feature: domain Description: HNHc Note: nucleases Location: 2433-25 95 bp Feature: gene Location: 2885-3337 bp Feature: domain Description: PRK13732 Location: 2891-3335 bp Feature: domain Description: PRK13732 Location: 2891-3335 bp Feature: gene Location: 3400-3633 bp Feature: domain Description: DUF905 Location: 3430-3628 bp Feature: domain Description: DUF905 Location: 3430-3628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JAAARU010000340.1 Escherichia coli strain 3467-2 Ec-3467-2_contig340, whole genome shotgun sequence (203 bp)
Overview 1 RT 1: 1-109 bp Neighborhood of RT #1 [1, 201] RVT-GII Feature: gene Location: 1-201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37-109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37-109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAARU010000403.1 Escherichia coli strain 3467-2 Ec-3467-2_contig403, whole genome shotgun sequence (1464 bp)
Overview 1 RT 1: 176-1217 bp Neighborhood of RT #1 [176, 1462] RVT-GII GIIM Feature: gene Location: 176-1462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212-944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 212-944 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1217 bp Feature: domain Description: GIIM Note: maturase Location: 1019-1217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)