myRT

myRT report for GCA_009908105.1_ASM990810v1

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Seq: JAAARS010000129.1 Escherichia coli strain 4354 Ec-4354_contig129, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAARS010000013.1 Escherichia coli strain 4354 Ec-4354_contig13, whole genome shotgun sequence (40983 bp)
Overview 1 RT 1: 27324-31206 bp Neighborhood of RT #1 [27324, 31211] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 27324-28040 bp Feature: domain Description: rph Location: 27327-28035 bp Feature: domain Description: rph Location: 2 732 7-2 8035 bp Feature: gene Location: 28091-28747 bp Feature: domain Description: pyrE Location: 28109-28742 bp Feature: domain Description: pyrE Location: 2 8109-2 8742 bp Feature: gene Location: 29045-30004 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29180-29729 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 9180-2 972 9 bp Feature: gene Location: 30050-30646 bp Feature: domain Description: slmA Location: 30056-30632 bp Feature: domain Description: slmA Location: 30056-30632 bp Feature: gene Location: 30753-31211 bp Feature: domain Description: dut Location: 30759-31206 bp Feature: domain Description: dut Location: 30759-312 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JAAARS010000133.1 Escherichia coli strain 4354 Ec-4354_contig133, whole genome shotgun sequence (7127 bp)
Overview 1 RT 1: 421-3604 bp Neighborhood of RT #1 [421, 3609] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 421-630 bp Feature: gene Location: 765-2666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032-1863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 2-1863 bp Feature: domain Description: Intron_maturas2 Location: 1977-2235 bp Feature: domain Description: Intron_maturas2 Location: 1977-223 5 bp Feature: domain Description: HNHc Note: nucleases Location: 2409-2571 bp Feature: domain Description: HNHc Note: nucleases Location: 2409-2571 bp Feature: gene Location: 2861-3313 bp Feature: domain Description: PRK13732 Location: 2867-3311 bp Feature: domain Description: PRK13 73 2 Location: 2867-3 3 11 bp Feature: gene Location: 3376-3609 bp Feature: domain Description: DUF905 Location: 3406-3604 bp Feature: domain Description: DUF905 Location: 3 406-3 604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JAAARS010000265.1 Escherichia coli strain 4354 Ec-4354_contig265, whole genome shotgun sequence (2083 bp)
Overview 1 RT 1: 3-2054 bp Neighborhood of RT #1 [3, 2080] DinI RVT-Retrons TIR_2 Feature: gene Location: 3-248 bp Feature: domain Description: DinI Location: 36-228 bp Feature: domain Description: DinI Location: 36-228 bp Feature: gene Location: 584-2080 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 899-1490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 899-14 90 bp Feature: domain Description: TIR_2 Location: 1817-2054 bp Feature: domain Description: TIR_2 Location: 1817-2054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, TIR_2 (pfam13676)

Seq: JAAARS010000348.1 Escherichia coli strain 4354 Ec-4354_contig348, whole genome shotgun sequence (8468 bp)
Overview 1 RT 1: 6-2760 bp Neighborhood of RT #1 [6, 2768] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 6-407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198-276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198-276 bp Feature: gene Location: 435-956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441-723 bp Feature: domain Description: GIIM Note: maturase Location: 771-951 bp Feature: domain Description: GIIM Note: maturase Location: 771-95 1 bp Feature: gene Location: 1278-1466 bp Feature: gene Location: 1506-2768 bp Feature: domain Description: YesM Location: 2019-2760 bp Feature: domain Description: YesM Location: 2019-2760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JAAARS010000412.1 Escherichia coli strain 4354 Ec-4354_contig412, whole genome shotgun sequence (9865 bp)
Overview 1 RT 1: 6-1861 bp Neighborhood of RT #1 [6, 1869] RVT-GII Asparaginase_2 Feature: gene Location: 6-314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174-276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174-276 bp Feature: gene Location: 362-511 bp Feature: gene Location: 838-1869 bp Feature: domain Description: Asparaginase_2 Location: 928-1861 bp Feature: domain Description: Asparaginase_2 Location: 928-186 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112)