myRT

myRT report for GCA_009908135.1_ASM990813v1

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Seq: JAAARR010000101.1 Escherichia coli strain 5823 Ec-5823_contig102, whole genome shotgun sequence (1137 bp)
Overview 1 RT 1: 3-1136 bp Neighborhood of RT #1 [3, 1136] RVT-GII Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 960-1136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAAARR010000153.1 Escherichia coli strain 5823 Ec-5823_contig154, whole genome shotgun sequence (11648 bp)
Overview 1 RT 1: 10621-11488 bp Neighborhood of RT #1 [10621, 11646] PRK10173 PRK10173 RVT-GII Feature: gene Location: 10621-11070 bp Feature: domain Description: PRK10173 Location: 10624-11062 bp Feature: domain Description: PRK10173 Location: 1062 4-11062 bp Feature: gene Location: 11054-11365 bp Feature: domain Description: PRK10173 Location: 11057-11276 bp Feature: domain Description: PRK10173 Location: 11057-112 76 bp Feature: gene Location: 11404-11646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11416-11488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11416-11488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: JAAARR010000163.1 Escherichia coli strain 5823 Ec-5823_contig164, whole genome shotgun sequence (13900 bp)
Overview 1 RT 1: 11142-13898 bp Neighborhood of RT #1 [11142, 13898] RVT-Retrons Feature: gene Location: 11142-11381 bp Feature: gene Location: 11688-11864 bp Feature: gene Location: 11937-13709 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12096-12714 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12096-12714 bp Feature: gene Location: 13731-13898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JAAARR010000177.1 Escherichia coli strain 5823 Ec-5823_contig178, whole genome shotgun sequence (8170 bp)
Overview 1 RT 1: 421-3604 bp Neighborhood of RT #1 [421, 3609] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 421-630 bp Feature: gene Location: 765-2666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032-1863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1032-1863 bp Feature: domain Description: Intron_maturas2 Location: 1977-2235 bp Feature: domain Description: Intron_maturas2 Location: 1977-2235 bp Feature: domain Description: HNHc Note: nucleases Location: 2409-2571 bp Feature: domain Description: HNHc Note: nucleases Location: 24 09-2571 bp Feature: gene Location: 2861-3313 bp Feature: domain Description: PRK13732 Location: 2867-3311 bp Feature: domain Description: PRK13732 Location: 2867-3311 bp Feature: gene Location: 3376-3609 bp Feature: domain Description: DUF905 Location: 3406-3604 bp Feature: domain Description: DUF905 Location: 34 06-3604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JAAARR010000214.1 Escherichia coli strain 5823 Ec-5823_contig215, whole genome shotgun sequence (2867 bp)
Overview 1 RT 1: 697-2620 bp Neighborhood of RT #1 [697, 2865] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 697-1101 bp Feature: domain Description: InsE Location: 727-1063 bp Feature: domain Description: InsE Location: 727-1063 bp Feature: gene Location: 1130-1486 bp Feature: domain Description: PHA02517 Location: 1133-1442 bp Feature: domain Description: PHA025 17 Location: 1133-1442 bp Feature: gene Location: 1603-2865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1615-2347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1615 -2347 bp Feature: domain Description: GIIM Note: maturase Location: 2422-2620 bp Feature: domain Description: GIIM Note: maturase Location: 2422-2620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JAAARR010000458.1 Escherichia coli strain 5823 Ec-5823_contig459, whole genome shotgun sequence (1151 bp)
Overview 1 RT 1: 42-876 bp Neighborhood of RT #1 [42, 1115] RVT-UG17 Feature: gene Location: 42-1115 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 270-876 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 270-876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17