myRT

myRT report for GCA_009908395.1_ASM990839v1

Download annotations/find similar RTs

Seq: JAAAOE010000082.1 Gammaproteobacteria bacterium isolate GSL.Bin16 NODE_2500_length_16427_cov_0.989758, whole genome shotgun sequence (16427 bp)
Overview 1 RT 1: 4647-12984 bp Neighborhood of RT #1 [4647, 13004] RVT-GII GIIM PRK04974 PRK00230 Feature: gene Location: 4647-7313 bp Feature: gene Location: 7840-7974 bp Feature: gene Location: 7964-9241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8177-8795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 77-8795 bp Feature: domain Description: GIIM Note: maturase Location: 8843-9062 bp Feature: domain Description: GIIM Note: maturase Location: 8843-9062 bp Feature: gene Location: 9591-12098 bp Feature: domain Description: PRK04974 Location: 9642-12066 bp Feature: domain Description: PRK04974 Location: 9642-1 2066 bp Feature: gene Location: 12345-13004 bp Feature: domain Description: PRK00230 Location: 12351-12984 bp Feature: domain Description: PRK00230 Location: 1 2351 -1 2984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK04974 (glycerol-3-phosphate 1-O-acyltransferase PlsB), PRK00230 (orotidine-5'-phosphate decarboxylase)

Seq: JAAAOE010000029.1 Gammaproteobacteria bacterium isolate GSL.Bin16 NODE_351_length_43769_cov_0.8835, whole genome shotgun sequence (43769 bp)
Overview 1 RT 1: 18540-26585 bp Neighborhood of RT #1 [18540, 26761] Cas2_I_II_III CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III TIGR03986 RAMP_I_III RAMP_I_III Feature: gene Location: 18540-18728 bp Feature: gene Location: 19746-20024 bp Feature: domain Description: Cas2_I_II_III Location: 19758-19968 bp Feature: domain Description: Cas2 _I_II_III Location: 19758-19968 bp Feature: gene Location: 20029-22974 bp Feature: domain Description: CRISPR_Cas6 Location: 20515-20899 bp Feature: domain Description: CRISPR_Cas6 Location: 2 0515-2 0899 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 21163-21760 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 1163-2 1760 bp Feature: domain Description: Cas1_I-II-III Location: 22006-22924 bp Feature: domain Description: Cas1_I-II-III Location: 2 2 006-2 2 92 4 bp Feature: gene Location: 22978-25161 bp Feature: domain Description: TIGR03986 Location: 22999-24730 bp Feature: domain Description: TIGR03986 Location: 2 2 999-2 4730 bp Feature: gene Location: 25163-26761 bp Feature: domain Description: RAMP_I_III Location: 25391-25739 bp Feature: domain Description: RAMP_I_III Location: 2 5391-2 5739 bp Feature: domain Description: RAMP_I_III Location: 26051-26585 bp Feature: domain Description: RAMP_I_III Location: 2 6051-2 6585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), TIGR03986 (CRISPR-associated protein), RAMP_I_III (cl21471)