myRT

myRT report for GCA_009908745.1_ASM990874v1

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Seq: JAAAOU010000264.1 Bacteroidetes bacterium isolate GSL.Bin30 NODE_20655_length_3311_cov_0.227273, whole genome shotgun sequence (3311 bp)
Overview 1 RT 1: 3-3310 bp Neighborhood of RT #1 [3, 3309] RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 3-1235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210-825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 0-825 bp Feature: domain Description: GIIM Note: maturase Location: 897-1110 bp Feature: domain Description: GIIM Note: maturase Location: 897-1 1 1 0 bp Feature: gene Location: 1565-1762 bp Feature: gene Location: 1830-1982 bp Feature: gene Location: 2536-3309 bp Feature: RT Description: RVT_N Location: 2698-2941 bp Feature: RT Description: RVT_N Location: 2698-2941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2986-3310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2986-331 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: JAAAOU010000128.1 Bacteroidetes bacterium isolate GSL.Bin30 NODE_26709_length_2622_cov_0.258297, whole genome shotgun sequence (2622 bp)
Overview 1 RT 1: 3-2416 bp Neighborhood of RT #1 [3, 2416] Trypsin_2 RVT-DGRs Avd_like Feature: gene Location: 3-548 bp Feature: domain Description: Trypsin_2 Location: 168-543 bp Feature: domain Description: Trypsin_2 Location: 168-543 bp Feature: gene Location: 545-1720 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 755-1394 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 755-1394 bp Feature: gene Location: 1722-2066 bp Feature: domain Description: Avd_like Location: 1743-2052 bp Feature: domain Description: Avd_like Location: 1743-2 052 bp Feature: gene Location: 2153-2416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), Trypsin_2 (pfam13365), RVT-DGRs

Seq: JAAAOU010000417.1 Bacteroidetes bacterium isolate GSL.Bin30 NODE_4373_length_11541_cov_0.309194, whole genome shotgun sequence (11541 bp)
Overview 1 RT 1: 3821-7521 bp Neighborhood of RT #1 [3821, 7541] RpoE RVT-Retrons Cas1_I-II-III Feature: gene Location: 3821-4450 bp Feature: domain Description: RpoE Location: 3917-4361 bp Feature: domain Description: RpoE Location: 3 917-43 61 bp Feature: gene Location: 4462-4830 bp Feature: gene Location: 4913-5956 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5063-5627 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5063 -5627 bp Feature: gene Location: 6281-6523 bp Feature: gene Location: 6564-7541 bp Feature: domain Description: Cas1_I-II-III Location: 6567-7521 bp Feature: domain Description: Cas1_I-II-III Location: 6567-7521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-Retrons, Cas1_I-II-III (cl00656)