myRT

myRT report for GCA_009909735.1_ASM990973v1

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Seq: VKIH01000147.1 Escherichia coli strain SL16 NODE_1318_length_2645_cov_131.227219, whole genome shotgun sequence (2675 bp)
Overview 1 RT 1: 155-1961 bp Neighborhood of RT #1 [155, 2056] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 155-2056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1 253 bp Feature: domain Description: Intron_maturas2 Location: 1367-1625 bp Feature: domain Description: Intron_maturas2 Location: 1 367-1 625 bp Feature: domain Description: HNHc Note: nucleases Location: 1799-1961 bp Feature: domain Description: HNHc Note: nucleases Location: 1 799-1 961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VKIH01000161.1 Escherichia coli strain SL16 NODE_1441_length_2725_cov_88.529175, whole genome shotgun sequence (2755 bp)
Overview 1 RT 1: 3-2752 bp Neighborhood of RT #1 [3, 2752] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3-188 bp Feature: gene Location: 628-2295 bp Feature: RT Description: RVT_N Location: 676-913 bp Feature: RT Description: RVT_N Location: 676-913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964-1606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964-1606 bp Feature: domain Description: GIIM Note: maturase Location: 1657-1891 bp Feature: domain Description: GIIM Note: maturase Location: 1657-1891 bp Feature: domain Description: HNHc Note: nucleases Location: 2101-2260 bp Feature: domain Description: HNHc Note: nucleases Location: 2 101-2 2 60 bp Feature: gene Location: 2609-2752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VKIH01000052.1 Escherichia coli strain SL16 NODE_197_length_62776_cov_76.688461, whole genome shotgun sequence (62806 bp)
Overview 1 RT 1: 21203-25085 bp Neighborhood of RT #1 [21203, 25090] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 21203-21661 bp Feature: domain Description: dut Location: 21209-21656 bp Feature: domain Description: dut Location: 21209-21656 bp Feature: gene Location: 21768-22364 bp Feature: domain Description: slmA Location: 21774-22350 bp Feature: domain Description: slmA Location: 21774-223 50 bp Feature: gene Location: 22410-23369 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22545-23094 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22545-23 094 bp Feature: gene Location: 23667-24323 bp Feature: domain Description: pyrE Location: 23685-24318 bp Feature: domain Description: pyrE Location: 23 685-243 18 bp Feature: gene Location: 24374-25090 bp Feature: domain Description: rph Location: 24377-25085 bp Feature: domain Description: rph Location: 243 77-25085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: VKIH01000266.1 Escherichia coli strain SL16 NODE_2365_length_1873_cov_50.510944, whole genome shotgun sequence (1903 bp)
Overview 1 RT 1: 2-1763 bp Neighborhood of RT #1 [2, 1763] IS285 RVT-GII Feature: gene Location: 2-748 bp Feature: domain Description: IS285 Location: 32-722 bp Feature: domain Description: IS285 Location: 32-722 bp Feature: gene Location: 797-1090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1076 bp Feature: gene Location: 1151-1372 bp Feature: gene Location: 1515-1763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII