myRT

myRT report for GCA_009909795.1_ASM990979v1

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Seq: VKIM01000075.1 Escherichia coli strain LB07 NODE_128_length_1022_cov_209.438354, whole genome shotgun sequence (1052 bp)
Overview 1 RT 1: 1-1050 bp Neighborhood of RT #1 [1, 1049] RVT-GII Feature: gene Location: 1-363 bp Feature: gene Location: 657-1049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VKIM01000015.1 Escherichia coli strain LB07 NODE_17_length_156225_cov_76.664673, whole genome shotgun sequence (156255 bp)
Overview 1 RT 1: 22245-28488 bp Neighborhood of RT #1 [22245, 28625] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22245-22511 bp Feature: domain Description: Phage_integrase Location: 22311-22407 bp Feature: domain Description: Phage_integrase Location: 2 2 311-2 2 407 bp Feature: gene Location: 22594-23064 bp Feature: gene Location: 23411-26620 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23939-24428 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3939-2 442 8 bp Feature: domain Description: nitrilase Location: 25934-26531 bp Feature: domain Description: nitrilase Location: 2 5934-2 6531 bp Feature: gene Location: 26915-27718 bp Feature: domain Description: AbiEi_3_N Location: 26948-27209 bp Feature: domain Description: AbiEi_3_N Location: 2 6948-2 72 09 bp Feature: domain Description: AbiEi_3 Location: 27221-27677 bp Feature: domain Description: AbiEi_3 Location: 2 72 2 1-2 7677 bp Feature: gene Location: 27705-28625 bp Feature: domain Description: AbiEii Location: 27747-28488 bp Feature: domain Description: AbiEii Location: 2 7747-2 8488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: VKIM01000163.1 Escherichia coli strain LB07 NODE_349_length_5179_cov_56.997875, whole genome shotgun sequence (5209 bp)
Overview 1 RT 1: 1180-4506 bp Neighborhood of RT #1 [1180, 4506] HTH_XRE RVT-Retrons FRG Feature: gene Location: 1180-1572 bp Feature: gene Location: 1609-1929 bp Feature: domain Description: HTH_XRE Location: 1624-1783 bp Feature: domain Description: HTH_XRE Location: 1624-1783 bp Feature: gene Location: 1895-2845 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2075-2618 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2075-2618 bp Feature: gene Location: 2954-4318 bp Feature: domain Description: FRG Location: 3521-3806 bp Feature: domain Description: FRG Location: 3 521-3 806 bp Feature: gene Location: 4357-4506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, FRG (smart00901)

Seq: VKIM01000038.1 Escherichia coli strain LB07 NODE_53_length_1220_cov_289.175415, whole genome shotgun sequence (1250 bp)
Overview 1 RT 1: 1-913 bp Neighborhood of RT #1 [1, 1158] RVT-GII GIIM Feature: gene Location: 1-1158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -64 0 bp Feature: domain Description: GIIM Note: maturase Location: 715-913 bp Feature: domain Description: GIIM Note: maturase Location: 715-913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VKIM01000264.1 Escherichia coli strain LB07 NODE_786_length_26535_cov_85.657356, whole genome shotgun sequence (26565 bp)
Overview 1 RT 1: 15437-19720 bp Neighborhood of RT #1 [15437, 19728] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 15437-16342 bp Feature: gene Location: 16480-16671 bp Feature: gene Location: 16828-17367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17158-17236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1715 8-17236 bp Feature: gene Location: 17395-17916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17401-17683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17401-17683 bp Feature: domain Description: GIIM Note: maturase Location: 17731-17911 bp Feature: domain Description: GIIM Note: maturase Location: 17731-17911 bp Feature: gene Location: 18238-18426 bp Feature: gene Location: 18466-19728 bp Feature: domain Description: YesM Location: 18979-19720 bp Feature: domain Description: YesM Location: 18979-19720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)