myRT

myRT report for GCA_009909835.1_ASM990983v1

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Seq: VKIP01000394.1 Escherichia coli strain HM21 NODE_1197_length_22927_cov_35.136608, whole genome shotgun sequence (22957 bp)
Overview 1 RT 1: 14199-17576 bp Neighborhood of RT #1 [14199, 17581] PRK09413 RVT-GII GIIM PinE Feature: gene Location: 14199-14396 bp Feature: domain Description: PRK09413 Location: 14202-14364 bp Feature: domain Description: PRK0941 3 Location: 1 4202-1 4364 bp Feature: gene Location: 14451-14801 bp Feature: gene Location: 14872-16224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15193-15811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 93-1 581 1 bp Feature: domain Description: GIIM Note: maturase Location: 15859-16090 bp Feature: domain Description: GIIM Note: maturase Location: 1 5859-1 6090 bp Feature: gene Location: 16433-16834 bp Feature: gene Location: 16934-17581 bp Feature: domain Description: PinE Location: 17027-17576 bp Feature: domain Description: PinE Location: 1 7027-1 7576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: VKIP01000016.1 Escherichia coli strain HM21 NODE_25_length_74503_cov_63.416534, whole genome shotgun sequence (74533 bp)
Overview 1 RT 1: 22155-28398 bp Neighborhood of RT #1 [22155, 28535] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22155-22421 bp Feature: domain Description: Phage_integrase Location: 22221-22317 bp Feature: domain Description: Phage_integrase Location: 2 2 2 2 1-2 2 317 bp Feature: gene Location: 22504-22974 bp Feature: gene Location: 23321-26530 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23849-24338 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3849-2 4338 bp Feature: domain Description: nitrilase Location: 25844-26441 bp Feature: domain Description: nitrilase Location: 2 5844-2 6441 bp Feature: gene Location: 26825-27628 bp Feature: domain Description: AbiEi_3_N Location: 26858-27119 bp Feature: domain Description: AbiEi_3_N Location: 2 6858-2 7119 bp Feature: domain Description: AbiEi_3 Location: 27131-27587 bp Feature: domain Description: AbiEi_3 Location: 2 7131-2 7587 bp Feature: gene Location: 27615-28535 bp Feature: domain Description: AbiEii Location: 27657-28398 bp Feature: domain Description: AbiEii Location: 2 7657-2 8398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: VKIP01000038.1 Escherichia coli strain HM21 NODE_57_length_39936_cov_67.364937, whole genome shotgun sequence (39966 bp)
Overview 1 RT 1: 30089-34372 bp Neighborhood of RT #1 [30089, 34380] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 30089-30994 bp Feature: gene Location: 31132-31323 bp Feature: gene Location: 31480-32019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31810-31888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1810-3 1888 bp Feature: gene Location: 32047-32568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32053-32335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2053 -3 23 3 5 bp Feature: domain Description: GIIM Note: maturase Location: 32383-32563 bp Feature: domain Description: GIIM Note: maturase Location: 3 23 83 -3 2563 bp Feature: gene Location: 32890-33078 bp Feature: gene Location: 33118-34380 bp Feature: domain Description: YesM Location: 33631-34372 bp Feature: domain Description: YesM Location: 3 3 63 1-3 43 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)