myRT

myRT report for GCA_009909875.1_ASM990987v1

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Seq: VKIR01000033.1 Escherichia coli strain HM06 NODE_137_length_155851_cov_59.187218, whole genome shotgun sequence (155881 bp)
Overview 1 RT 1: 127631-133662 bp Neighborhood of RT #1 [127631, 133662] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 127631-128551 bp Feature: domain Description: AbiEii Location: 127673-128414 bp Feature: domain Description: AbiEii Location: 1 27673-1 2841 4 bp Feature: gene Location: 128538-129341 bp Feature: domain Description: AbiEi_3_N Location: 128571-128832 bp Feature: domain Description: AbiEi_3_N Location: 1 28571 -1 28832 bp Feature: domain Description: AbiEi_3 Location: 128844-129300 bp Feature: domain Description: AbiEi_3 Location: 1 28844-1 29300 bp Feature: gene Location: 129636-132845 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130164-130653 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 301 64-1 30653 bp Feature: domain Description: nitrilase Location: 132159-132756 bp Feature: domain Description: nitrilase Location: 1 321 59-1 32756 bp Feature: gene Location: 133006-133146 bp Feature: domain Description: Phage_ASH Location: 133033-133126 bp Feature: domain Description: Phage_ASH Location: 1 33033-1 331 26 bp Feature: gene Location: 133192-133662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: VKIR01000053.1 Escherichia coli strain HM06 NODE_221_length_25265_cov_72.195999, whole genome shotgun sequence (25295 bp)
Overview 1 RT 1: 15425-19708 bp Neighborhood of RT #1 [15425, 19716] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 15425-16330 bp Feature: gene Location: 16468-16659 bp Feature: gene Location: 16816-17355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17146-17224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17146-172 2 4 bp Feature: gene Location: 17383-17904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17389-17671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17389-17671 bp Feature: domain Description: GIIM Note: maturase Location: 17719-17899 bp Feature: domain Description: GIIM Note: maturase Location: 17719-17899 bp Feature: gene Location: 18226-18414 bp Feature: gene Location: 18454-19716 bp Feature: domain Description: YesM Location: 18967-19708 bp Feature: domain Description: YesM Location: 18967-19708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: VKIR01000017.1 Escherichia coli strain HM06 NODE_57_length_2242_cov_165.766281, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)