myRT

myRT report for GCA_009909895.1_ASM990989v1

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Seq: VKIS01000086.1 Escherichia coli strain HM05 NODE_124_length_2242_cov_166.841660, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VKIS01000010.1 Escherichia coli strain HM05 NODE_14_length_155851_cov_58.679451, whole genome shotgun sequence (155881 bp)
Overview 1 RT 1: 127631-133662 bp Neighborhood of RT #1 [127631, 133662] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 127631-128551 bp Feature: domain Description: AbiEii Location: 127673-128414 bp Feature: domain Description: AbiEii Location: 12 7673-12 8414 bp Feature: gene Location: 128538-129341 bp Feature: domain Description: AbiEi_3_N Location: 128571-128832 bp Feature: domain Description: AbiEi_3_N Location: 12 8571-12 8832 bp Feature: domain Description: AbiEi_3 Location: 128844-129300 bp Feature: domain Description: AbiEi_3 Location: 12 8844-12 9300 bp Feature: gene Location: 129636-132845 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130164-130653 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130164-130653 bp Feature: domain Description: nitrilase Location: 132159-132756 bp Feature: domain Description: nitrilase Location: 132 159-132 756 bp Feature: gene Location: 133006-133146 bp Feature: domain Description: Phage_ASH Location: 133033-133126 bp Feature: domain Description: Phage_ASH Location: 133033-13312 6 bp Feature: gene Location: 133192-133662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: VKIS01000039.1 Escherichia coli strain HM05 NODE_55_length_25154_cov_73.066032, whole genome shotgun sequence (25184 bp)
Overview 1 RT 1: 15314-19597 bp Neighborhood of RT #1 [15314, 19605] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 15314-16219 bp Feature: gene Location: 16357-16548 bp Feature: gene Location: 16705-17244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17035-17113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703 5-17113 bp Feature: gene Location: 17272-17793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17278-17560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17278-17560 bp Feature: domain Description: GIIM Note: maturase Location: 17608-17788 bp Feature: domain Description: GIIM Note: maturase Location: 17608-17788 bp Feature: gene Location: 18115-18303 bp Feature: gene Location: 18343-19605 bp Feature: domain Description: YesM Location: 18856-19597 bp Feature: domain Description: YesM Location: 18856-19597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)