myRT

myRT report for GCA_009909935.1_ASM990993v1

Download annotations/find similar RTs

Seq: VKIJ01000232.1 Escherichia coli strain LM15 NODE_1457_length_1127_cov_57.442768, whole genome shotgun sequence (1157 bp)
Overview 1 RT 1: 115-1060 bp Neighborhood of RT #1 [115, 1155] RVT-GII GIIM Feature: gene Location: 115-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145-766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45-766 bp Feature: domain Description: GIIM Note: maturase Location: 850-1060 bp Feature: domain Description: GIIM Note: maturase Location: 850-1 060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VKIJ01000259.1 Escherichia coli strain LM15 NODE_1589_length_4263_cov_53.444523, whole genome shotgun sequence (4293 bp)
Overview 1 RT 1: 1098-4291 bp Neighborhood of RT #1 [1098, 4291] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1098-1325 bp Feature: gene Location: 1334-1660 bp Feature: gene Location: 2234-3901 bp Feature: domain Description: RVT_N Location: 2282-2519 bp Feature: domain Description: RVT_N Location: 2 2 82 -2 519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2570-3212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 570-32 12 bp Feature: domain Description: GIIM Note: maturase Location: 3263-3497 bp Feature: domain Description: GIIM Note: maturase Location: 32 63-3497 bp Feature: domain Description: HNHc Note: nucleases Location: 3707-3866 bp Feature: domain Description: HNHc Note: nucleases Location: 3707-3866 bp Feature: gene Location: 4016-4291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VKIJ01000303.1 Escherichia coli strain LM15 NODE_2352_length_36089_cov_74.403503, whole genome shotgun sequence (36119 bp)
Overview 1 RT 1: 22087-23888 bp Neighborhood of RT #1 [22087, 23888] RVT-GII Feature: gene Location: 22087-22347 bp Feature: gene Location: 22362-22511 bp Feature: gene Location: 22709-23386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22823-23375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22823 -23 3 75 bp Feature: gene Location: 23373-23681 bp Feature: gene Location: 23715-23888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VKIJ01000023.1 Escherichia coli strain LM15 NODE_255_length_128192_cov_75.710327, whole genome shotgun sequence (128222 bp)
Overview 1 RT 1: 106-6041 bp Neighborhood of RT #1 [106, 6307] RVT-UG5 nitrilase PRK09692 HTH_XRE Feature: gene Location: 106-249 bp Feature: gene Location: 255-944 bp Feature: gene Location: 941-3817 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1415-1943 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14 15-194 3 bp Feature: domain Description: nitrilase Location: 3155-3737 bp Feature: domain Description: nitrilase Location: 3155-3737 bp Feature: gene Location: 3909-5165 bp Feature: domain Description: PRK09692 Location: 3918-5121 bp Feature: domain Description: PRK09692 Location: 3918-5121 bp Feature: gene Location: 5843-6307 bp Feature: domain Description: HTH_XRE Location: 5873-6041 bp Feature: domain Description: HTH_XRE Location: 5873-604 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), PRK09692 (Integrase; provisional), HTH_XRE (smart00530)