myRT

myRT report for GCA_009909965.1_ASM990996v1

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Seq: VKIT01000167.1 Escherichia coli strain BJ08 NODE_1120_length_2503_cov_27.360767, whole genome shotgun sequence (2533 bp)
Overview 1 RT 1: 1-2261 bp Neighborhood of RT #1 [1, 2296] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-189 bp Feature: gene Location: 629-2296 bp Feature: RT Description: RVT_N Location: 677-914 bp Feature: RT Description: RVT_N Location: 677-91 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 965-1607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 965-1 607 bp Feature: domain Description: GIIM Note: maturase Location: 1658-1892 bp Feature: domain Description: GIIM Note: maturase Location: 1 658-1 892 bp Feature: domain Description: HNHc Note: nucleases Location: 2102-2261 bp Feature: domain Description: HNHc Note: nucleases Location: 21 02-2261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VKIT01000010.1 Escherichia coli strain BJ08 NODE_90_length_56100_cov_57.578217, whole genome shotgun sequence (56130 bp)
Overview 1 RT 1: 41305-47171 bp Neighborhood of RT #1 [41305, 47176] RVT-Retrons Q P Feature: gene Location: 41305-42147 bp Feature: gene Location: 42570-43418 bp Feature: gene Location: 43420-44349 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43519-44104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43519-44104 bp Feature: gene Location: 44385-45410 bp Feature: domain Description: Q Location: 44388-45402 bp Feature: domain Description: Q Location: 44388-45402 bp Feature: gene Location: 45410-47176 bp Feature: domain Description: P Location: 45437-47171 bp Feature: domain Description: P Location: 45437-47171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)