myRT

myRT report for GCA_009909995.1_ASM990999v1

Download annotations/find similar RTs

Seq: VKIW01000309.1 Escherichia coli strain BI10 NODE_1786_length_16162_cov_22.000866, whole genome shotgun sequence (16192 bp)
Overview 1 RT 1: 12837-15326 bp Neighborhood of RT #1 [12837, 15391] RVT-GII Inovirus_Gp2 Feature: gene Location: 12837-13010 bp Feature: gene Location: 13044-13352 bp Feature: gene Location: 13339-14502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13453-14140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3453-1 41 40 bp Feature: gene Location: 14828-15391 bp Feature: domain Description: Inovirus_Gp2 Location: 14885-15326 bp Feature: domain Description: Inovirus_Gp2 Location: 1 4885-1 5326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Inovirus_Gp2 (pfam11726)

Seq: VKIW01000189.1 Escherichia coli strain BI10 NODE_680_length_2242_cov_86.051292, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VKIW01000207.1 Escherichia coli strain BI10 NODE_819_length_15285_cov_70.478310, whole genome shotgun sequence (15315 bp)
Overview 1 RT 1: 2275-6275 bp Neighborhood of RT #1 [2275, 6283] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2275-3636 bp Feature: domain Description: DcuC Location: 2278-3610 bp Feature: domain Description: DcuC Location: 2278-3 610 bp Feature: gene Location: 3689-4060 bp Feature: gene Location: 4282-4728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4588-4690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4588-4690 bp Feature: gene Location: 4776-4925 bp Feature: gene Location: 5252-6283 bp Feature: domain Description: Asparaginase_2 Location: 5342-6275 bp Feature: domain Description: Asparaginase_2 Location: 53 42-6275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: VKIW01000228.1 Escherichia coli strain BI10 NODE_980_length_20054_cov_63.864815, whole genome shotgun sequence (20084 bp)
Overview 1 RT 1: 572-6101 bp Neighborhood of RT #1 [572, 6101] RVT-UG1 GerD Feature: gene Location: 572-4261 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1184-1694 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1184 -1694 bp Feature: gene Location: 4270-4704 bp Feature: domain Description: GerD Location: 4348-4462 bp Feature: domain Description: GerD Location: 4 34 8-4 4 62 bp Feature: gene Location: 5001-6101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, GerD (pfam17898)