myRT

myRT report for GCA_009910055.1_ASM991005v1

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Seq: VKIU01000156.1 Escherichia coli strain BJ05 NODE_1016_length_36648_cov_69.623032, whole genome shotgun sequence (36678 bp)
Overview 1 RT 1: 15093-19384 bp Neighborhood of RT #1 [15093, 19384] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 15093-16355 bp Feature: domain Description: YesM Location: 15606-16347 bp Feature: domain Description: YesM Location: 1 5606-1 6347 bp Feature: gene Location: 16385-16555 bp Feature: gene Location: 16905-17426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16911-17193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 691 1 -1 71 93 bp Feature: domain Description: GIIM Note: maturase Location: 17241-17421 bp Feature: domain Description: GIIM Note: maturase Location: 1 7241 -1 7421 bp Feature: gene Location: 17454-17993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17784-17862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7784-1 7862 bp Feature: gene Location: 18024-18221 bp Feature: gene Location: 18479-19384 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: VKIU01000184.1 Escherichia coli strain BJ05 NODE_1112_length_1032_cov_115.409882, whole genome shotgun sequence (1062 bp)
Overview 1 RT 1: 3-994 bp Neighborhood of RT #1 [3, 994] RVT-GII Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 76-330 bp Feature: gene Location: 623-994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VKIU01000213.1 Escherichia coli strain BJ05 NODE_1212_length_1332_cov_54.260509, whole genome shotgun sequence (1362 bp)
Overview 1 RT 1: 138-1116 bp Neighborhood of RT #1 [138, 1361] RVT-GII GIIM Feature: gene Location: 138-1361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-843 bp Feature: domain Description: GIIM Note: maturase Location: 918-1116 bp Feature: domain Description: GIIM Note: maturase Location: 918-1116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VKIU01000016.1 Escherichia coli strain BJ05 NODE_22_length_37346_cov_76.360466, whole genome shotgun sequence (37376 bp)
Overview 1 RT 1: 15867-24456 bp Neighborhood of RT #1 [15867, 25631] COG4688 COG4688 RVT-UG3 RVT-UG8 BRR2 BRR2 Feature: gene Location: 15867-17900 bp Feature: domain Description: COG4688 Location: 15870-16776 bp Feature: domain Description: COG4 688 Location: 15870-16776 bp Feature: domain Description: COG4688 Location: 17151-17874 bp Feature: domain Description: COG4 688 Location: 17151-17874 bp Feature: gene Location: 17893-18312 bp Feature: gene Location: 18364-19713 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 18820-19297 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 18820-19297 bp Feature: gene Location: 19706-21748 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 20318-20765 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 20318-20765 bp Feature: gene Location: 22156-22338 bp Feature: gene Location: 22476-25631 bp Feature: domain Description: BRR2 Location: 23199-23775 bp Feature: domain Description: BRR2 Location: 23199-23775 bp Feature: domain Description: BRR2 Location: 24210-24456 bp Feature: domain Description: BRR2 Location: 24 210-24 4 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4688 (Uncharacterized protein ), RVT-UG3, RVT-UG8, BRR2 (COG1204)

Seq: VKIU01000054.1 Escherichia coli strain BJ05 NODE_301_length_21195_cov_144.571457, whole genome shotgun sequence (21225 bp)
Overview 1 RT 1: 7191-8992 bp Neighborhood of RT #1 [7191, 8992] RVT-GII Feature: gene Location: 7191-7451 bp Feature: gene Location: 7466-7615 bp Feature: gene Location: 7813-8490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7927-8479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7927-8479 bp Feature: gene Location: 8477-8785 bp Feature: gene Location: 8819-8992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VKIU01000132.1 Escherichia coli strain BJ05 NODE_845_length_34061_cov_73.236343, whole genome shotgun sequence (34091 bp)
Overview 1 RT 1: 30140-33226 bp Neighborhood of RT #1 [30140, 33267] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 30140-30289 bp Feature: gene Location: 30590-31576 bp Feature: gene Location: 31578-32510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31680-32274 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 316 80-32274 bp Feature: gene Location: 32536-32781 bp Feature: gene Location: 32965-33267 bp Feature: domain Description: Arm-DNA-bind_3 Location: 32974-33226 bp Feature: domain Description: Arm-DNA-bind_3 Location: 32974-33226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)