myRT

myRT report for GCA_009910155.1_ASM991015v1

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Seq: VKIV01000159.1 Escherichia coli strain BJ01 NODE_2034_length_19674_cov_42.556622, whole genome shotgun sequence (19704 bp)
Overview 1 RT 1: 12668-15918 bp Neighborhood of RT #1 [12668, 15918] PRK13720 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 12668-12880 bp Feature: domain Description: PRK13720 Location: 12671-12878 bp Feature: domain Description: PRK1 3720 Location: 1 2671 -1 2878 bp Feature: gene Location: 13009-13164 bp Feature: gene Location: 13279-14946 bp Feature: domain Description: RVT_N Location: 13327-13564 bp Feature: domain Description: RVT_N Location: 1 3327-1 3564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13615-14257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 361 5-1 4257 bp Feature: domain Description: GIIM Note: maturase Location: 14308-14542 bp Feature: domain Description: GIIM Note: maturase Location: 1 4308-1 4542 bp Feature: domain Description: HNHc Note: nucleases Location: 14752-14911 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4752-1 491 1 bp Feature: gene Location: 15226-15408 bp Feature: gene Location: 15604-15918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13720 (modulator of post-segregation killing protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VKIV01000004.1 Escherichia coli strain BJ01 NODE_30_length_165906_cov_54.080620, whole genome shotgun sequence (165936 bp)
Overview 1 RT 1: 22155-28398 bp Neighborhood of RT #1 [22155, 28535] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22155-22421 bp Feature: domain Description: Phage_integrase Location: 22221-22317 bp Feature: domain Description: Phage_integrase Location: 2 2 2 2 1-2 2 317 bp Feature: gene Location: 22504-22974 bp Feature: gene Location: 23321-26530 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23849-24338 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3849-2 4338 bp Feature: domain Description: nitrilase Location: 25844-26441 bp Feature: domain Description: nitrilase Location: 2 5844-2 6441 bp Feature: gene Location: 26825-27628 bp Feature: domain Description: AbiEi_3_N Location: 26858-27119 bp Feature: domain Description: AbiEi_3_N Location: 2 6858-2 7119 bp Feature: domain Description: AbiEi_3 Location: 27131-27587 bp Feature: domain Description: AbiEi_3 Location: 2 7131-2 7587 bp Feature: gene Location: 27615-28535 bp Feature: domain Description: AbiEii Location: 27657-28398 bp Feature: domain Description: AbiEii Location: 2 7657-2 8398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: VKIV01000334.1 Escherichia coli strain BJ01 NODE_3249_length_559_cov_47.132378, whole genome shotgun sequence (589 bp)
Overview 1 RT 1: 1-457 bp Neighborhood of RT #1 [1, 588] RVT-GII RVT-GII Feature: gene Location: 1-195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-190 bp Feature: gene Location: 223-588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 79-457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VKIV01000335.1 Escherichia coli strain BJ01 NODE_3250_length_11837_cov_52.020275, whole genome shotgun sequence (11867 bp)
Overview 1 RT 1: 2-1815 bp Neighborhood of RT #1 [2, 1823] RVT-GII Asparaginase_2 Feature: gene Location: 2-274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134-236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134 -236 bp Feature: gene Location: 322-465 bp Feature: gene Location: 792-1823 bp Feature: domain Description: Asparaginase_2 Location: 882-1815 bp Feature: domain Description: Asparaginase_2 Location: 882-1815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Asparaginase_2 (pfam01112)

Seq: VKIV01000063.1 Escherichia coli strain BJ01 NODE_863_length_1453_cov_141.046799, whole genome shotgun sequence (1483 bp)
Overview 1 RT 1: 3-1146 bp Neighborhood of RT #1 [3, 1391] RVT-GII GIIM Feature: gene Location: 3-1391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-873 bp Feature: domain Description: GIIM Note: maturase Location: 948-1146 bp Feature: domain Description: GIIM Note: maturase Location: 948-1146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)