myRT

myRT report for GCA_009910235.1_ASM991023v1

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Seq: VKJF01000238.1 Escherichia coli strain BI16 NODE_1902_length_4003_cov_57.076691, whole genome shotgun sequence (4033 bp)
Overview 1 RT 1: 166-3946 bp Neighborhood of RT #1 [166, 3946] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 166-399 bp Feature: domain Description: DUF905 Location: 196-394 bp Feature: domain Description: DUF905 Location: 1 96-394 bp Feature: gene Location: 457-897 bp Feature: domain Description: PRK13732 Location: 463-895 bp Feature: domain Description: PRK1 3732 Location: 463-895 bp Feature: gene Location: 1092-2993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1359-2190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 359-21 90 bp Feature: domain Description: Intron_maturas2 Location: 2304-2562 bp Feature: domain Description: Intron_maturas2 Location: 2304-2562 bp Feature: domain Description: HNHc Note: nucleases Location: 2736-2898 bp Feature: domain Description: HNHc Note: nucleases Location: 2736-2898 bp Feature: gene Location: 3710-3946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: VKJF01000002.1 Escherichia coli strain BI16 NODE_2_length_39147_cov_49.118656, whole genome shotgun sequence (39177 bp)
Overview 1 RT 1: 12194-18981 bp Neighborhood of RT #1 [12194, 19871] Q RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 12194-13213 bp Feature: domain Description: Q Location: 12197-13208 bp Feature: domain Description: Q Location: 12 197-132 08 bp Feature: gene Location: 13256-13963 bp Feature: gene Location: 13960-15150 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14110-14692 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14110-14692 bp Feature: gene Location: 15701-17245 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 16118-16571 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 16118-16571 bp Feature: gene Location: 17411-17671 bp Feature: gene Location: 17733-19871 bp Feature: domain Description: Phage_GPA Location: 17994-18981 bp Feature: domain Description: Phage_GPA Location: 17994-18981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)