myRT

myRT report for GCA_009910295.1_ASM991029v1

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Seq: VKJG01000081.1 Escherichia coli strain BI09 NODE_193_length_2283_cov_98.045113, whole genome shotgun sequence (2313 bp)
Overview 1 RT 1: 106-2312 bp Neighborhood of RT #1 [106, 2312] RVT-GII GIIM Feature: gene Location: 106-1629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1 1 1 1 bp Feature: domain Description: GIIM Note: maturase Location: 1186-1384 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 86-1 384 bp Feature: gene Location: 1923-2312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VKJG01000134.1 Escherichia coli strain BI09 NODE_347_length_39242_cov_70.445312, whole genome shotgun sequence (39272 bp)
Overview 1 RT 1: 34813-39260 bp Neighborhood of RT #1 [34813, 39271] prfC SLATT_5 RVT-UG17 Caudo_TAP Feature: gene Location: 34813-36399 bp Feature: domain Description: prfC Location: 34831-36397 bp Feature: domain Description: prfC Location: 34831-36397 bp Feature: gene Location: 36930-37634 bp Feature: domain Description: SLATT_5 Location: 37092-37602 bp Feature: domain Description: SLATT_5 Location: 37092 -37602 bp Feature: gene Location: 37612-38982 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 37840-38446 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 37840-38446 bp Feature: gene Location: 39095-39271 bp Feature: domain Description: Caudo_TAP Location: 39098-39260 bp Feature: domain Description: Caudo_TAP Location: 39098-392 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413)

Seq: VKJG01000211.1 Escherichia coli strain BI09 NODE_571_length_33500_cov_66.058746, whole genome shotgun sequence (33530 bp)
Overview 1 RT 1: 6446-10806 bp Neighborhood of RT #1 [6446, 10808] D PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 6446-7546 bp Feature: domain Description: D Location: 6452-7535 bp Feature: domain Description: D Location: 6452-753 5 bp Feature: gene Location: 7637-7855 bp Feature: domain Description: PRK09678 Location: 7640-7838 bp Feature: domain Description: PRK09678 Location: 7640-783 8 bp Feature: gene Location: 8259-9032 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 8394-8847 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 83 94-8847 bp Feature: gene Location: 9718-10200 bp Feature: domain Description: SmpB Location: 9748-10195 bp Feature: domain Description: SmpB Location: 9748-10195 bp Feature: gene Location: 10332-10808 bp Feature: domain Description: PRK10724 Location: 10338-10806 bp Feature: domain Description: PRK10724 Location: 103 3 8-10806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)