myRT

myRT report for GCA_009910675.1_ASM991067v1

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Seq: RSEJ01000097.1 Photobacterium alginatilyticum strain P03D4 scaffold_105, whole genome shotgun sequence (1891 bp)
Overview 1 RT 1: 37-1824 bp Neighborhood of RT #1 [37, 1824] RVT-GII GIIM Feature: gene Location: 37-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256-868 bp Feature: domain Description: GIIM Note: maturase Location: 922-1126 bp Feature: domain Description: GIIM Note: maturase Location: 922-1 1 26 bp Feature: gene Location: 1522-1824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RSEJ01000018.1 Photobacterium alginatilyticum strain P03D4 scaffold_17, whole genome shotgun sequence (212954 bp)
Overview 1 RT 1: 149831-154522 bp Neighborhood of RT #1 [149831, 154596] flavo_cyto_c RVT-GII GIIM GntR Feature: gene Location: 149831-151369 bp Feature: domain Description: flavo_cyto_c Location: 149978-151343 bp Feature: domain Description: flavo_cyto_c Location: 149978-151343 bp Feature: gene Location: 151629-151787 bp Feature: gene Location: 151973-153286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152192-152804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 192 -152 804 bp Feature: domain Description: GIIM Note: maturase Location: 152858-153062 bp Feature: domain Description: GIIM Note: maturase Location: 152 858-153062 bp Feature: gene Location: 153496-153627 bp Feature: gene Location: 153910-154596 bp Feature: domain Description: GntR Location: 153919-154522 bp Feature: domain Description: GntR Location: 153919-15452 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT flavo_cyto_c (TIGR01813), RVT-GII, GIIM (pfam08388), GntR (pfam00392)

Seq: RSEJ01000003.1 Photobacterium alginatilyticum strain P03D4 scaffold_2, whole genome shotgun sequence (327227 bp)
Overview 1 RT 1: 305687-311830 bp Neighborhood of RT #1 [305687, 311880] peroxid_rel HTH_1 PBP2_CrgA_like_2 RVT-Retrons ABC_Iron-Siderophores_B12_Hemin ABC_Iron-Siderophores_B12_Hemin Acetyltransf_1 Acetyltransf_18 Feature: gene Location: 305687-306235 bp Feature: domain Description: peroxid_rel Location: 305705-306173 bp Feature: domain Description: peroxid_rel Location: 3 05705-3 06173 bp Feature: gene Location: 306388-307299 bp Feature: domain Description: HTH_1 Location: 306403-306577 bp Feature: domain Description: HTH_1 Location: 3 06403 -3 06577 bp Feature: domain Description: PBP2_CrgA_like_2 Location: 306664-307264 bp Feature: domain Description: PBP2_CrgA_like_2 Location: 3 06664-3 07264 bp Feature: gene Location: 307970-308971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 308093-308657 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 08093 -3 08657 bp Feature: gene Location: 308974-310344 bp Feature: domain Description: ABC_Iron-Siderophores_B12_Hemin Location: 309013-309115 bp Feature: domain Description: ABC_Iron-Siderophores_B12_Hemin Location: 3 09013 -3 09115 bp Feature: domain Description: ABC_Iron-Siderophores_B12_Hemin Location: 309538-309727 bp Feature: domain Description: ABC_Iron-Siderophores_B12_Hemin Location: 3 0953 8-3 09727 bp Feature: gene Location: 311017-311880 bp Feature: domain Description: Acetyltransf_1 Location: 311122-311344 bp Feature: domain Description: Acetyltransf_1 Location: 3 11122-3 113 44 bp Feature: domain Description: Acetyltransf_18 Location: 311488-311830 bp Feature: domain Description: Acetyltransf_18 Location: 3 11488-3 1183 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT peroxid_rel (TIGR01926), HTH_1 (pfam00126), PBP2_CrgA_like_2 (cd08471), RVT-Retrons, ABC_Iron-Siderophores_B12_Hemin (cd03214), Acetyltransf_1 (pfam00583), Acetyltransf_18 (pfam18014)

Seq: RSEJ01000022.1 Photobacterium alginatilyticum strain P03D4 scaffold_21, whole genome shotgun sequence (114823 bp)
Overview 1 RT 1: 28471-33171 bp Neighborhood of RT #1 [28471, 33171] AlpA RVT-UG8 RVT-UG3 INT_P4_C Feature: gene Location: 28471-28800 bp Feature: domain Description: AlpA Location: 28618-28777 bp Feature: domain Description: AlpA Location: 28618-28777 bp Feature: gene Location: 28934-29095 bp Feature: gene Location: 29107-31071 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 29617-30067 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 29617-30067 bp Feature: gene Location: 31064-32314 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 31352-31841 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 31352-3184 1 bp Feature: gene Location: 32374-32523 bp Feature: domain Description: INT_P4_C Location: 32380-32494 bp Feature: domain Description: INT_P4 _C Location: 32380-324 94 bp Feature: gene Location: 33022-33171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-UG8, RVT-UG3, INT_P4_C (cd00801)