myRT

myRT report for GCA_009911065.1_ASM991106v1

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Seq: QXWR01000001.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold1_1, whole genome shotgun sequence (253177 bp)
Overview 1 RT 1: 104079-106656 bp 2 RT 2: 191181-196014 bp Neighborhood of RT #1 [104079, 106685] XhlA RVT-DGRs Avd_like Neighborhood of RT #2 [191181, 196112] GlgC PRK13259 RVT-UNC N6_N4_Mtase N6_N4_Mtase Feature: gene Location: 104079-104396 bp Feature: gene Location: 104414-104680 bp Feature: domain Description: XhlA Location: 104441-104645 bp Feature: domain Description: XhlA Location: 1 04441 -1 04645 bp Feature: gene Location: 104735-105859 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 104981-105641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 04981 -1 05641 bp Feature: gene Location: 105975-106229 bp Feature: gene Location: 106260-106685 bp Feature: domain Description: Avd_like Location: 106347-106656 bp Feature: domain Description: Avd_like Location: 1 06347-1 06656 bp Feature: gene Location: 191181-192302 bp Feature: domain Description: GlgC Location: 191190-192252 bp Feature: domain Description: GlgC Location: 1 91 1 90-1 92252 bp Feature: gene Location: 192320-192601 bp Feature: domain Description: PRK13259 Location: 192323-192572 bp Feature: domain Description: PRK1 3259 Location: 1 92323-1 92572 bp Feature: gene Location: 192753-194357 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 193191-193623 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 931 91 -1 93623 bp Feature: gene Location: 194392-194694 bp Feature: gene Location: 194760-196112 bp Feature: domain Description: N6_N4_Mtase Location: 194847-195093 bp Feature: domain Description: N6_N4_Mtase Location: 1 94847-1 95093 bp Feature: domain Description: N6_N4_Mtase Location: 195660-196014 bp Feature: domain Description: N6_N4_Mtase Location: 1 95660-1 9601 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), RVT-DGRs, Avd_like (cd16376), GlgC (COG0448), PRK13259 (septation regulator SpoVG), RVT-UG16/RVT-UG12/RVT-UG8/RVT-UG7(RVT-UNC), N6_N4_Mtase (pfam01555)

Seq: QXWR01000021.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold21_1, whole genome shotgun sequence (87260 bp)
Overview 1 RT 1: 44521-49897 bp Neighborhood of RT #1 [44521, 49897] DUF3801 VirD4 RVT-GII HNHc TraG-D_C Feature: gene Location: 44521-45003 bp Feature: domain Description: DUF3801 Location: 44599-44938 bp Feature: domain Description: DUF3801 Location: 44599-44938 bp Feature: gene Location: 45003-46043 bp Feature: domain Description: VirD4 Location: 45228-46026 bp Feature: domain Description: VirD4 Location: 452 2 8-4602 6 bp Feature: gene Location: 46794-48698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47109-47841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47109-47841 bp Feature: domain Description: HNHc Note: nucleases Location: 48420-48588 bp Feature: domain Description: HNHc Note: nucleases Location: 4842 0-48588 bp Feature: gene Location: 48829-49572 bp Feature: domain Description: TraG-D_C Location: 49006-49357 bp Feature: domain Description: TraG-D_C Location: 49006-49357 bp Feature: gene Location: 49682-49897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696)

Seq: QXWR01000002.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold2_1, whole genome shotgun sequence (189691 bp)
Overview 1 RT 1: 136910-141064 bp Neighborhood of RT #1 [136910, 141345] RVT-DGRs DUF3751 Feature: gene Location: 136910-137179 bp Feature: gene Location: 137272-137463 bp Feature: gene Location: 137813-139045 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 138107-138728 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13 8107-13 8728 bp Feature: gene Location: 139454-140743 bp Feature: gene Location: 140743-141345 bp Feature: domain Description: DUF3751 Location: 140767-141064 bp Feature: domain Description: DUF3 751 Location: 140767-141064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3751 (pfam12571)

Seq: QXWR01000031.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold31_1, whole genome shotgun sequence (66742 bp)
Overview 1 RT 1: 20015-23448 bp Neighborhood of RT #1 [20015, 23945] RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 20015-20398 bp Feature: gene Location: 20403-20699 bp Feature: gene Location: 20842-21936 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21052-21712 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21052-21712 bp Feature: gene Location: 22343-22813 bp Feature: domain Description: Avd_like Location: 22439-22760 bp Feature: domain Description: Avd_like Location: 224 39-22760 bp Feature: gene Location: 22878-23945 bp Feature: domain Description: FGE-sulfatase Location: 23136-23448 bp Feature: domain Description: FGE-sulfatase Location: 23136-234 4 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: QXWR01000033.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold33_1, whole genome shotgun sequence (64725 bp)
Overview 1 RT 1: 43533-49506 bp Neighborhood of RT #1 [43533, 49506] TTHA1623-like_MBL-fold rSAM_HemZ RVT-Retrons PAS_3 PAS_3 TMAO_torS Feature: gene Location: 43533-44183 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 43554-44157 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 435 5 4-4415 7 bp Feature: gene Location: 44246-45775 bp Feature: domain Description: rSAM_HemZ Location: 44528-45755 bp Feature: domain Description: rSAM_HemZ Location: 445 28-45 75 5 bp Feature: gene Location: 45772-46833 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45955-46573 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45 95 5 -465 73 bp Feature: gene Location: 46932-49106 bp Feature: domain Description: PAS_3 Location: 47130-47310 bp Feature: domain Description: PAS_3 Location: 47130-47310 bp Feature: domain Description: PAS_3 Location: 47652-47829 bp Feature: domain Description: PAS_3 Location: 4765 2-47829 bp Feature: domain Description: TMAO_torS Location: 47901-49068 bp Feature: domain Description: TMAO_torS Location: 47901-49068 bp Feature: gene Location: 49171-49506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TTHA1623-like_MBL-fold (cd16322), rSAM_HemZ (TIGR03994), RVT-Retrons, PAS_3 (pfam08447), TMAO_torS (TIGR02956)

Seq: QXWR01000040.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold40_1, whole genome shotgun sequence (48592 bp)
Overview 1 RT 1: 4249-9017 bp Neighborhood of RT #1 [4249, 9151] ATPase_2 Mrr_cat YhcG_C RVT-GII GIIM Phage_holin_4_1 Feature: gene Location: 4249-5391 bp Feature: domain Description: ATPase_2 Location: 4345-4492 bp Feature: domain Description: ATPase_2 Location: 4345-4492 bp Feature: domain Description: Mrr_cat Location: 5014-5374 bp Feature: domain Description: Mrr_cat Location: 5014-5374 bp Feature: gene Location: 5492-5824 bp Feature: domain Description: YhcG_C Location: 5504-5792 bp Feature: domain Description: YhcG_C Location: 5504-5792 bp Feature: gene Location: 6605-7966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6887-7502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 887-7502 bp Feature: domain Description: GIIM Note: maturase Location: 7562-7793 bp Feature: domain Description: GIIM Note: maturase Location: 756 2-7793 bp Feature: gene Location: 8091-8558 bp Feature: gene Location: 8720-9151 bp Feature: domain Description: Phage_holin_4_1 Location: 8774-9017 bp Feature: domain Description: Phage_holin_4_1 Location: 8774-9017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ATPase_2 (pfam01637), Mrr_cat (pfam04471), YhcG_C, RVT-GII, GIIM (pfam08388), Phage_holin_4_1 (pfam05105)

Seq: QXWR01000043.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold43_1, whole genome shotgun sequence (43505 bp)
Overview 1 RT 1: 17324-32146 bp Neighborhood of RT #1 [17324, 33063] PRK07726 HsdM COG4646 KOG1000 RVT_N RVT-GII GIIM ArdC Feature: gene Location: 17324-19450 bp Feature: domain Description: PRK07726 Location: 17327-19208 bp Feature: domain Description: PRK07 7 26 Location: 17 327 -19208 bp Feature: gene Location: 19545-27788 bp Feature: domain Description: HsdM Location: 24114-24666 bp Feature: domain Description: HsdM Location: 24114-24666 bp Feature: domain Description: COG4646 Location: 24732-27291 bp Feature: domain Description: COG4646 Location: 247 32-27 291 bp Feature: domain Description: KOG1000 Location: 27645-27771 bp Feature: domain Description: KOG1000 Location: 27 645-27 7 7 1 bp Feature: gene Location: 28161-30044 bp Feature: domain Description: RVT_N Location: 28416-28659 bp Feature: domain Description: RVT_N Location: 28416-28659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28704-29349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287 04-29349 bp Feature: domain Description: GIIM Note: maturase Location: 29406-29637 bp Feature: domain Description: GIIM Note: maturase Location: 29406-29637 bp Feature: gene Location: 30045-31112 bp Feature: gene Location: 31357-33063 bp Feature: domain Description: ArdC Location: 31570-32146 bp Feature: domain Description: ArdC Location: 3157 0-32146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07726 (DNA topoisomerase 3), HsdM (COG0286), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ArdC (COG4227)

Seq: QXWR01000005.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold5_1, whole genome shotgun sequence (173878 bp)
Overview 1 RT 1: 87565-91239 bp Neighborhood of RT #1 [87565, 91730] NGN_Bact_2 RVT-GII GIIM Collagen ChtBD3 Collagen Collagen ChtBD3 Collagen Collagen ChtBD3 Feature: gene Location: 87565-88080 bp Feature: domain Description: NGN_Bact_2 Location: 87574-87871 bp Feature: domain Description: NGN_Bact_2 Location: 8 7574-8 78 71 bp Feature: gene Location: 88312-88563 bp Feature: gene Location: 89000-89557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89009-89225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 9009-8 9225 bp Feature: domain Description: GIIM Note: maturase Location: 89306-89525 bp Feature: domain Description: GIIM Note: maturase Location: 8 9306-8 9525 bp Feature: gene Location: 89594-89722 bp Feature: gene Location: 89871-91730 bp Feature: domain Description: Collagen Location: 90018-90063 bp Feature: domain Description: Collagen Location: 90018 -90063 bp Feature: domain Description: ChtBD3 Location: 90090-90150 bp Feature: domain Description: ChtBD3 Location: 90090-90150 bp Feature: domain Description: Collagen Location: 90219-90390 bp Feature: domain Description: Collagen Location: 90219-90390 bp Feature: domain Description: Collagen Location: 90417-90588 bp Feature: domain Description: Collagen Location: 90417-9058 8 bp Feature: domain Description: ChtBD3 Location: 90612-90708 bp Feature: domain Description: ChtBD3 Location: 90612-90708 bp Feature: domain Description: Collagen Location: 90744-90897 bp Feature: domain Description: Collagen Location: 90744-908 97 bp Feature: domain Description: Collagen Location: 90960-91122 bp Feature: domain Description: Collagen Location: 90960-91122 bp Feature: domain Description: ChtBD3 Location: 91146-91239 bp Feature: domain Description: ChtBD3 Location: 91146-91239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_Bact_2 (cd09889), RVT-GII, GIIM (pfam08388), Collagen (pfam01391), ChtBD3 (smart00495)

Seq: QXWR01000081.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold81_1, whole genome shotgun sequence (10304 bp)
Overview 1 RT 1: 1024-7620 bp Neighborhood of RT #1 [1024, 8183] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT_N RVT-GII GIIM AbiJ_NTD3 Feature: gene Location: 1024-1215 bp Feature: gene Location: 1270-3201 bp Feature: domain Description: SR_TndX_transposase Location: 1312-1726 bp Feature: domain Description: SR_TndX_transposase Location: 1312-1726 bp Feature: domain Description: Recombinase Location: 1831-2206 bp Feature: domain Description: Recombinase Location: 1831-2206 bp Feature: domain Description: Zn_ribbon_recom Location: 2245-2437 bp Feature: domain Description: Zn_ribbon_recom Location: 2245-2437 bp Feature: domain Description: DUF4368 Location: 2713-2908 bp Feature: domain Description: DUF4368 Location: 2713-29 08 bp Feature: gene Location: 3618-5504 bp Feature: domain Description: RVT_N Location: 3879-4122 bp Feature: domain Description: RVT_N Location: 3879 -4122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4167-4812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4167-4812 bp Feature: domain Description: GIIM Note: maturase Location: 4869-5100 bp Feature: domain Description: GIIM Note: maturase Location: 4869 -5100 bp Feature: gene Location: 5505-6650 bp Feature: gene Location: 6843-8183 bp Feature: domain Description: AbiJ_NTD3 Location: 7119-7620 bp Feature: domain Description: AbiJ_NTD3 Location: 7119 -7620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AbiJ_NTD3 (pfam18860)

Seq: QXWR01000008.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold8_1, whole genome shotgun sequence (139975 bp)
Overview 1 RT 1: 100397-103403 bp Neighborhood of RT #1 [100397, 103403] Avd_like RVT-DGRs XhlA Feature: gene Location: 100397-100825 bp Feature: domain Description: Avd_like Location: 100487-100793 bp Feature: domain Description: Avd_like Location: 10 0487-10 0793 bp Feature: gene Location: 100935-101129 bp Feature: gene Location: 101237-102373 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 101483-102143 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10 1483-10 2143 bp Feature: gene Location: 102421-102687 bp Feature: domain Description: XhlA Location: 102448-102652 bp Feature: domain Description: XhlA Location: 10 2448-10 2652 bp Feature: gene Location: 103020-103403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XhlA (pfam10779)

Seq: QXWR01000093.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold93_1, whole genome shotgun sequence (6733 bp)
Overview 1 RT 1: 1027-6333 bp Neighborhood of RT #1 [1027, 6333] KOG1000 RVT-GII HNHc Feature: gene Location: 1027-2094 bp Feature: gene Location: 2132-3856 bp Feature: domain Description: KOG1000 Location: 2633-2843 bp Feature: domain Description: KOG1000 Location: 2633-2843 bp Feature: gene Location: 3863-5776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172-4916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172-4916 bp Feature: domain Description: HNHc Note: nucleases Location: 5504-5630 bp Feature: domain Description: HNHc Note: nucleases Location: 5504-5630 bp Feature: gene Location: 5823-6098 bp Feature: gene Location: 6199-6333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, HNHc (smart00507)

Seq: QXWR01000097.1 Clostridiaceae bacterium strain 1XD21-29 Scaffold97_1, whole genome shotgun sequence (5626 bp)
Overview 1 RT 1: 1945-5380 bp Neighborhood of RT #1 [1945, 5380] YozG RVT-GII HNHc Feature: gene Location: 1945-2640 bp Feature: gene Location: 2776-2979 bp Feature: domain Description: YozG Location: 2785-2971 bp Feature: domain Description: YozG Location: 2785-2971 bp Feature: gene Location: 3317-5191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3644-4382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3644-4382 bp Feature: domain Description: HNHc Note: nucleases Location: 4919-5078 bp Feature: domain Description: HNHc Note: nucleases Location: 4919-5078 bp Feature: gene Location: 5249-5380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YozG (COG3655), RVT-GII, HNHc (smart00507)