myRT

myRT report for GCA_009911095.1_ASM991109v1

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Seq: QXWQ01000143.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold112_1, whole genome shotgun sequence (26330 bp)
Overview 1 RT 1: 1847-7491 bp Neighborhood of RT #1 [1847, 7491] RVT-GII Feature: gene Location: 1847-2311 bp Feature: gene Location: 2324-2818 bp Feature: gene Location: 2913-4802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3231-3936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3231 -3936 bp Feature: gene Location: 5519-6766 bp Feature: gene Location: 6886-7491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QXWQ01000013.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold13_1, whole genome shotgun sequence (163030 bp)
Overview 1 RT 1: 19689-23359 bp Neighborhood of RT #1 [19689, 23359] RVT-DGRs Avd_like Feature: gene Location: 19689-20003 bp Feature: gene Location: 20014-20310 bp Feature: gene Location: 20327-21670 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20753-21413 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 0753-2 1413 bp Feature: gene Location: 21819-22208 bp Feature: domain Description: Avd_like Location: 21876-22197 bp Feature: domain Description: Avd_like Location: 2 1876-2 2 197 bp Feature: gene Location: 22283-23359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: QXWQ01000296.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold222_1, whole genome shotgun sequence (11049 bp)
Overview 1 RT 1: 8429-10731 bp Neighborhood of RT #1 [8429, 10940] TnpV HNHc RVT-GII zf-ISL3 Feature: gene Location: 8429-8764 bp Feature: domain Description: TnpV Location: 8588-8756 bp Feature: domain Description: TnpV Location: 8588-8756 bp Feature: gene Location: 8858-9421 bp Feature: domain Description: HNHc Note: nucleases Location: 9158-9308 bp Feature: domain Description: HNHc Note: nucleases Location: 9158-93 08 bp Feature: gene Location: 9457-10278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9694-10171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9694-10171 bp Feature: gene Location: 10497-10940 bp Feature: domain Description: zf-ISL3 Location: 10605-10731 bp Feature: domain Description: zf-ISL3 Location: 10605-1073 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), HNHc (smart00507), RVT-GII, zf-ISL3 (pfam14690)

Seq: QXWQ01000032.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold27_1, whole genome shotgun sequence (92465 bp)
Overview 1 RT 1: 18085-20659 bp Neighborhood of RT #1 [18085, 20688] XhlA RVT-DGRs Avd_like Feature: gene Location: 18085-18402 bp Feature: gene Location: 18418-18684 bp Feature: domain Description: XhlA Location: 18445-18652 bp Feature: domain Description: XhlA Location: 184 4 5-18652 bp Feature: gene Location: 18738-19862 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18984-19641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18984 -1964 1 bp Feature: gene Location: 19977-20231 bp Feature: gene Location: 20263-20688 bp Feature: domain Description: Avd_like Location: 20350-20659 bp Feature: domain Description: Avd_like Location: 20350-20659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), RVT-DGRs, Avd_like (cd16376)

Seq: QXWQ01000044.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold37_1, whole genome shotgun sequence (73628 bp)
Overview 1 RT 1: 17967-21777 bp Neighborhood of RT #1 [17967, 21788] CHAP CW_7 LysM Phage_holin_4_1 RVT-DGRs Avd_like Feature: gene Location: 17967-19379 bp Feature: domain Description: CHAP Location: 18693-18963 bp Feature: domain Description: CHAP Location: 18693-18963 bp Feature: domain Description: CW_7 Location: 19104-19215 bp Feature: domain Description: CW_7 Location: 19104-19215 bp Feature: domain Description: LysM Location: 19245-19374 bp Feature: domain Description: LysM Location: 19245 -19374 bp Feature: gene Location: 19369-19923 bp Feature: domain Description: Phage_holin_4_1 Location: 19441-19804 bp Feature: domain Description: Phage_holin_4_1 Location: 19441-19804 bp Feature: gene Location: 19958-21070 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20171-20831 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20171-20831 bp Feature: gene Location: 21131-21301 bp Feature: gene Location: 21381-21788 bp Feature: domain Description: Avd_like Location: 21441-21777 bp Feature: domain Description: Avd_like Location: 21441-21777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHAP (pfam05257), CW_7 (pfam08230), LysM (smart00257), Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376)

Seq: QXWQ01000558.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold414_1, whole genome shotgun sequence (4973 bp)
Overview 1 RT 1: 675-3228 bp Neighborhood of RT #1 [675, 3228] RVT-DGRs Feature: gene Location: 675-827 bp Feature: gene Location: 886-1014 bp Feature: gene Location: 1105-2319 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1384-2047 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1384-2047 bp Feature: gene Location: 2335-2547 bp Feature: gene Location: 2740-3228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QXWQ01000004.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold4_1, whole genome shotgun sequence (254020 bp)
Overview 1 RT 1: 164551-171414 bp Neighborhood of RT #1 [164551, 171414] RVT-Retrons zinc_ribbon_2 COG1579 Feature: gene Location: 164551-167346 bp Feature: gene Location: 167337-169115 bp Feature: gene Location: 169178-170578 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 169727-170351 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1697 27 -17 0351 bp Feature: gene Location: 170694-171044 bp Feature: domain Description: zinc_ribbon_2 Location: 170727-170790 bp Feature: domain Description: zinc_ribbon_2 Location: 17 07 27 -17 07 90 bp Feature: domain Description: COG1579 Location: 170802-170982 bp Feature: domain Description: COG157 9 Location: 17 0802-17 0982 bp Feature: gene Location: 171112-171414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, zinc_ribbon_2 (pfam13240), COG1579 (Predicted nucleic acid-binding protein, contains Zn-ribbon domain )

Seq: QXWQ01000005.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold5_1, whole genome shotgun sequence (233850 bp)
Overview 1 RT 1: 219900-225024 bp Neighborhood of RT #1 [219900, 225035] T_den_put_tspse RVT-UG2 DUF1269 SHOCT Feature: gene Location: 219900-220040 bp Feature: gene Location: 220226-221041 bp Feature: domain Description: T_den_put_tspse Location: 220283-221009 bp Feature: domain Description: T_den_put_tspse Location: 22028 3-221009 bp Feature: gene Location: 221450-222790 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 221651-222488 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 221651-22248 8 bp Feature: gene Location: 222858-224405 bp Feature: domain Description: DUF1269 Location: 223971-224232 bp Feature: domain Description: DUF1269 Location: 223971-224232 bp Feature: gene Location: 224409-225035 bp Feature: domain Description: SHOCT Location: 224946-225024 bp Feature: domain Description: SHOCT Location: 224946-225024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T_den_put_tspse (TIGR01784), RVT-UG2, DUF1269 (pfam06897), SHOCT (pfam09851)

Seq: QXWQ01000906.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold676_1, whole genome shotgun sequence (2608 bp)
Overview 1 RT 1: 1-2606 bp Neighborhood of RT #1 [1, 2606] GIIM RVT_N RVT-GII Feature: gene Location: 1-294 bp Feature: gene Location: 371-907 bp Feature: domain Description: GIIM Note: maturase Location: 374-542 bp Feature: domain Description: GIIM Note: maturase Location: 374-542 bp Feature: gene Location: 914-2044 bp Feature: domain Description: RVT_N Location: 986-1226 bp Feature: domain Description: RVT_N Location: 9 86-1226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-19 34 bp Feature: gene Location: 2136-2408 bp Feature: gene Location: 2460-2606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT_N (pfam13655), RVT-GII

Seq: QXWQ01000097.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold73_1, whole genome shotgun sequence (39856 bp)
Overview 1 RT 1: 22145-29377 bp Neighborhood of RT #1 [22145, 29394] COG1373 UvrD_C_2 RVT-AbiK LRV LRV LRV LRV LRV LRV RyR Feature: gene Location: 22145-23383 bp Feature: domain Description: COG1373 Location: 22172-23375 bp Feature: domain Description: COG1373 Location: 22172-23375 bp Feature: gene Location: 23729-23887 bp Feature: domain Description: UvrD_C_2 Location: 23777-23858 bp Feature: domain Description: UvrD_C_2 Location: 23777-23858 bp Feature: gene Location: 24565-26181 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 24997-25417 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 24997-25417 bp Feature: gene Location: 27733-28398 bp Feature: domain Description: LRV Location: 27772-27835 bp Feature: domain Description: LRV Location: 27772-27835 bp Feature: domain Description: LRV Location: 27871-27934 bp Feature: domain Description: LRV Location: 27871-27934 bp Feature: domain Description: LRV Location: 27952-28018 bp Feature: domain Description: LRV Location: 27952-28018 bp Feature: domain Description: LRV Location: 28027-28093 bp Feature: domain Description: LRV Location: 28027-28093 bp Feature: domain Description: LRV Location: 28123-28171 bp Feature: domain Description: LRV Location: 28123-28171 bp Feature: domain Description: LRV Location: 28183-28249 bp Feature: domain Description: LRV Location: 28183-28249 bp Feature: gene Location: 29032-29394 bp Feature: domain Description: RyR Location: 29182-29377 bp Feature: domain Description: RyR Location: 29182-29377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), UvrD_C_2 (pfam13538), RVT-AbiK, LRV (pfam01816), RyR (pfam02026)

Seq: QXWQ01000113.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold88_1, whole genome shotgun sequence (33092 bp)
Overview 1 RT 1: 2-3549 bp Neighborhood of RT #1 [2, 3549] RVT-DGRs ChiA1_BD ChiA1_BD Feature: gene Location: 2-499 bp Feature: gene Location: 511-1401 bp Feature: gene Location: 1612-2721 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1888-2488 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1888-2488 bp Feature: gene Location: 2792-3229 bp Feature: domain Description: ChiA1_BD Location: 2924-3038 bp Feature: domain Description: ChiA1_BD Location: 2924-3038 bp Feature: domain Description: ChiA1_BD Location: 3116-3221 bp Feature: domain Description: ChiA1_BD Location: 311 6-3221 bp Feature: gene Location: 3364-3549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ChiA1_BD (cd12214)

Seq: QXWQ01000117.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold90_3, whole genome shotgun sequence (4760 bp)
Overview 1 RT 1: 462-3015 bp Neighborhood of RT #1 [462, 3015] RVT-DGRs Feature: gene Location: 462-614 bp Feature: gene Location: 673-801 bp Feature: gene Location: 892-2106 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1171-1834 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1171-1834 bp Feature: gene Location: 2122-2334 bp Feature: gene Location: 2527-3015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QXWQ01000009.1 Clostridiaceae bacterium strain 1XD21-45 Scaffold9_1, whole genome shotgun sequence (177470 bp)
Overview 1 RT 1: 100826-107531 bp Neighborhood of RT #1 [100826, 107531] Transposase_31 RVT-Retrons asn_synth_AEB Feature: gene Location: 100826-101818 bp Feature: domain Description: Transposase_31 Location: 100859-101396 bp Feature: domain Description: Transposase_31 Location: 100859-1013 96 bp Feature: gene Location: 101932-102840 bp Feature: gene Location: 102995-103999 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103145-103703 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103145-103703 bp Feature: gene Location: 104152-106011 bp Feature: domain Description: asn_synth_AEB Location: 104164-105769 bp Feature: domain Description: asn_synth_AEB Location: 104164-105769 bp Feature: gene Location: 106080-107531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_31 (pfam04754), RVT-Retrons, asn_synth_AEB (TIGR01536)