myRT

myRT report for GCA_009911105.1_ASM991110v1

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Seq: QXWS01000116.1 Clostridiaceae bacterium strain 1XD21-30 Scaffold111_1, whole genome shotgun sequence (4576 bp)
Overview 1 RT 1: 123-4378 bp Neighborhood of RT #1 [123, 4422] TraG-D_C RVT-GII HNHc T4SS-DNA_transf T4SS-DNA_transf Feature: gene Location: 123-1109 bp Feature: domain Description: TraG-D_C Location: 546-900 bp Feature: domain Description: TraG-D_C Location: 546-900 bp Feature: gene Location: 1342-3249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1681-2428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 681 -2428 bp Feature: domain Description: HNHc Note: nucleases Location: 2995-3133 bp Feature: domain Description: HNHc Note: nucleases Location: 2995-31 33 bp Feature: gene Location: 3446-3703 bp Feature: gene Location: 3955-4422 bp Feature: domain Description: T4SS-DNA_transf Location: 3997-4126 bp Feature: domain Description: T4SS-DNA_transf Location: 3997-41 26 bp Feature: domain Description: T4SS-DNA_transf Location: 4213-4378 bp Feature: domain Description: T4SS-DNA_transf Location: 421 3-4378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534)

Seq: QXWS01000011.1 Clostridiaceae bacterium strain 1XD21-30 Scaffold11_1, whole genome shotgun sequence (106226 bp)
Overview 1 RT 1: 296-4426 bp Neighborhood of RT #1 [296, 4426] Dam RVT-DGRs Feature: gene Location: 296-1051 bp Feature: domain Description: Dam Location: 302-1049 bp Feature: domain Description: Dam Location: 302 -1049 bp Feature: gene Location: 1119-1382 bp Feature: gene Location: 1354-2553 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1549-2266 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1549-2 2 66 bp Feature: gene Location: 2861-3451 bp Feature: gene Location: 3503-4426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dam (pfam05869), RVT-DGRs

Seq: QXWS01000012.1 Clostridiaceae bacterium strain 1XD21-30 Scaffold12_1, whole genome shotgun sequence (101653 bp)
Overview 1 RT 1: 66823-70741 bp 2 RT 2: 75740-79997 bp Neighborhood of RT #1 [66823, 70741] RVT-DGRs Neighborhood of RT #2 [75740, 80026] UPRTase RVT-Retrons HTH_TipAL-Mta TipAS Feature: gene Location: 66823-67035 bp Feature: gene Location: 67114-68409 bp Feature: gene Location: 68820-70025 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 69114-69669 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 69114-69669 bp Feature: gene Location: 69985-70329 bp Feature: gene Location: 70499-70741 bp Feature: gene Location: 75740-76606 bp Feature: domain Description: UPRTase Location: 76205-76355 bp Feature: domain Description: UPRTase Location: 76205-763 55 bp Feature: gene Location: 76615-76908 bp Feature: gene Location: 77184-78221 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77409-77964 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77409-77964 bp Feature: gene Location: 78526-78993 bp Feature: gene Location: 79148-80026 bp Feature: domain Description: HTH_TipAL-Mta Location: 79157-79457 bp Feature: domain Description: HTH_TipAL-Mta Location: 79157-79457 bp Feature: domain Description: TipAS Location: 79637-79997 bp Feature: domain Description: TipAS Location: 7963 7-79997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, UPRTase (pfam14681), RVT-Retrons, HTH_TipAL-Mta (cd01106), TipAS (pfam07739)

Seq: QXWS01000023.1 Clostridiaceae bacterium strain 1XD21-30 Scaffold22_2, whole genome shotgun sequence (64960 bp)
Overview 1 RT 1: 21542-27535 bp Neighborhood of RT #1 [21542, 27561] PAS_3 TMAO_torS RVT-Retrons rSAM_HemZ TTHA1623-like_MBL-fold Feature: gene Location: 21542-21919 bp Feature: gene Location: 21855-24161 bp Feature: domain Description: PAS_3 Location: 22185-22365 bp Feature: domain Description: PAS_3 Location: 22185-22365 bp Feature: domain Description: TMAO_torS Location: 22956-24120 bp Feature: domain Description: TMAO_torS Location: 22956-24 120 bp Feature: gene Location: 24261-25322 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24444-25062 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24 4 4 4 -25062 bp Feature: gene Location: 25319-26848 bp Feature: domain Description: rSAM_HemZ Location: 25601-26828 bp Feature: domain Description: rSAM_HemZ Location: 25601-26828 bp Feature: gene Location: 26911-27561 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 26932-27535 bp Feature: domain Description: TTHA1623-like_MBL-fold Location: 26932-27535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS_3 (pfam08447), TMAO_torS (TIGR02956), RVT-Retrons, rSAM_HemZ (TIGR03994), TTHA1623-like_MBL-fold (cd16322)

Seq: QXWS01000044.1 Clostridiaceae bacterium strain 1XD21-30 Scaffold40_1, whole genome shotgun sequence (42105 bp)
Overview 1 RT 1: 10779-15679 bp Neighborhood of RT #1 [10779, 15690] VirD4 RVT-GII HNHc TraG-D_C Maff2 Feature: gene Location: 10779-11810 bp Feature: domain Description: VirD4 Location: 11004-11793 bp Feature: domain Description: VirD4 Location: 11004-11793 bp Feature: gene Location: 12265-12480 bp Feature: gene Location: 12559-14463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12874-13606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12874-13606 bp Feature: domain Description: HNHc Note: nucleases Location: 14185-14353 bp Feature: domain Description: HNHc Note: nucleases Location: 14185 -1435 3 bp Feature: gene Location: 14657-15319 bp Feature: domain Description: TraG-D_C Location: 14771-15125 bp Feature: domain Description: TraG-D_C Location: 14771-15 125 bp Feature: gene Location: 15454-15690 bp Feature: domain Description: Maff2 Location: 15553-15679 bp Feature: domain Description: Maff2 Location: 15 5 5 3-15 679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696), Maff2 (pfam12750)

Seq: QXWS01000004.1 Clostridiaceae bacterium strain 1XD21-30 Scaffold4_1, whole genome shotgun sequence (165343 bp)
Overview 1 RT 1: 106073-109655 bp Neighborhood of RT #1 [106073, 109762] Avd_like RVT-DGRs SdhC Feature: gene Location: 106073-107119 bp Feature: gene Location: 107195-107611 bp Feature: domain Description: Avd_like Location: 107261-107585 bp Feature: domain Description: Avd_like Location: 10726 1-107585 bp Feature: gene Location: 107979-109055 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108189-108852 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108189-108852 bp Feature: gene Location: 109061-109372 bp Feature: gene Location: 109388-109762 bp Feature: domain Description: SdhC Location: 109400-109655 bp Feature: domain Description: SdhC Location: 109400-1096 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, SdhC (COG2009)

Seq: QXWS01000098.1 Clostridiaceae bacterium strain 1XD21-30 Scaffold93_1, whole genome shotgun sequence (7577 bp)
Overview 1 RT 1: 340-3601 bp Neighborhood of RT #1 [340, 3699] RVT-UNC N6_N4_Mtase N6_N4_Mtase Feature: gene Location: 340-1944 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 778-1210 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 7 7 8-1210 bp Feature: gene Location: 1979-2281 bp Feature: gene Location: 2347-3699 bp Feature: domain Description: N6_N4_Mtase Location: 2434-2680 bp Feature: domain Description: N6_N4_Mtase Location: 2434-2680 bp Feature: domain Description: N6_N4_Mtase Location: 3247-3601 bp Feature: domain Description: N6_N4_Mtase Location: 3247 -3601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG16/RVT-UG12/RVT-UG8/RVT-UG7(RVT-UNC), N6_N4_Mtase (pfam01555)