myRT

myRT report for GCA_009911235.1_ASM991123v1

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Seq: QXWZ01000014.1 Anaerotruncus colihominis strain X69 Scaffold13_1, whole genome shotgun sequence (89304 bp)
Overview 1 RT 1: 84268-89264 bp Neighborhood of RT #1 [84268, 89302] Spr RVT-GII Intron_maturas2 VirB4_CagE Feature: gene Location: 84268-86031 bp Feature: domain Description: Spr Location: 85678-86008 bp Feature: domain Description: Spr Location: 85678-86008 bp Feature: gene Location: 86012-86236 bp Feature: gene Location: 86405-88195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86672-87485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86672-87485 bp Feature: domain Description: Intron_maturas2 Location: 87569-87863 bp Feature: domain Description: Intron_maturas2 Location: 87569-87863 bp Feature: gene Location: 88724-89302 bp Feature: domain Description: VirB4_CagE Location: 88751-89264 bp Feature: domain Description: VirB4_CagE Location: 88751 -89264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), VirB4_CagE (TIGR00929)

Seq: QXWZ01000015.1 Anaerotruncus colihominis strain X69 Scaffold14_1, whole genome shotgun sequence (86093 bp)
Overview 1 RT 1: 2104-8191 bp Neighborhood of RT #1 [2104, 8191] RVT-Retrons CstA CstA Feature: gene Location: 2104-3117 bp Feature: gene Location: 3114-3410 bp Feature: gene Location: 3605-4609 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3818-4352 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3818-4352 bp Feature: gene Location: 4987-6447 bp Feature: domain Description: CstA Location: 4990-5458 bp Feature: domain Description: CstA Location: 4990-5458 bp Feature: domain Description: CstA Location: 5470-6310 bp Feature: domain Description: CstA Location: 5470-6310 bp Feature: gene Location: 6803-8191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CstA (pfam02554)

Seq: QXWZ01000016.1 Anaerotruncus colihominis strain X69 Scaffold15_1, whole genome shotgun sequence (84842 bp)
Overview 1 RT 1: 52562-58569 bp 2 RT 2: 64068-68756 bp Neighborhood of RT #1 [52562, 58589] NlpD TraC-F-type RVT_N RVT-GII GIIM VirB4 Neighborhood of RT #2 [64068, 68756] DUF4406 RVT-GII HNHc Feature: gene Location: 52562-53653 bp Feature: domain Description: NlpD Location: 53261-53651 bp Feature: domain Description: NlpD Location: 53 261-53 651 bp Feature: gene Location: 53660-54727 bp Feature: domain Description: TraC-F-type Location: 54182-54617 bp Feature: domain Description: TraC-F-type Location: 54182-54617 bp Feature: gene Location: 54732-56411 bp Feature: RT Description: RVT_N Location: 54810-55053 bp Feature: RT Description: RVT_N Location: 54810-55053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55098-55758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55098-55758 bp Feature: domain Description: GIIM Note: maturase Location: 55812-56046 bp Feature: domain Description: GIIM Note: maturase Location: 55812-56046 bp Feature: gene Location: 56667-56810 bp Feature: gene Location: 56940-58589 bp Feature: domain Description: VirB4 Location: 58035-58569 bp Feature: domain Description: VirB4 Location: 5803 5-58569 bp Feature: gene Location: 64068-64403 bp Feature: domain Description: DUF4406 Location: 64080-64359 bp Feature: domain Description: DUF4406 Location: 64080-643 59 bp Feature: gene Location: 64419-65345 bp Feature: gene Location: 65404-67287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65737-66478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6573 7-66478 bp Feature: domain Description: HNHc Note: nucleases Location: 67024-67174 bp Feature: domain Description: HNHc Note: nucleases Location: 67024-67174 bp Feature: gene Location: 67207-67611 bp Feature: gene Location: 68049-68756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirB4 (COG3451), DUF4406 (pfam14359), HNHc (smart00507)

Seq: QXWZ01000001.1 Anaerotruncus colihominis strain X69 Scaffold1_1, whole genome shotgun sequence (210933 bp)
Overview 1 RT 1: 9670-12528 bp Neighborhood of RT #1 [9670, 12545] RVT-GII Intron_maturas2 Recombinase Feature: gene Location: 9670-9825 bp Feature: gene Location: 9997-10155 bp Feature: gene Location: 10200-12083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10533-11355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10533-11355 bp Feature: domain Description: Intron_maturas2 Location: 11427-11736 bp Feature: domain Description: Intron_maturas2 Location: 114 27-11736 bp Feature: gene Location: 12083-12244 bp Feature: gene Location: 12414-12545 bp Feature: domain Description: Recombinase Location: 12426-12528 bp Feature: domain Description: Recombinase Location: 124 26-12528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Recombinase (pfam07508)

Seq: QXWZ01000007.1 Anaerotruncus colihominis strain X69 Scaffold7_1, whole genome shotgun sequence (138450 bp)
Overview 1 RT 1: 125656-128526 bp Neighborhood of RT #1 [125656, 128526] RVT-GII Maff2 Feature: gene Location: 125656-126255 bp Feature: gene Location: 126434-126676 bp Feature: gene Location: 126864-127460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126885-127317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 126885 -127317 bp Feature: gene Location: 127952-128083 bp Feature: domain Description: Maff2 Location: 127955-128081 bp Feature: domain Description: Maff2 Location: 12795 5 -128081 bp Feature: gene Location: 128305-128526 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Maff2 (pfam12750)