myRT

myRT report for GCA_009911275.1_ASM991127v1

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Seq: QXWY01000014.1 Lachnospiraceae bacterium strain X54 Scaffold12_1, whole genome shotgun sequence (119680 bp)
Overview 1 RT 1: 12017-15404 bp Neighborhood of RT #1 [12017, 15895] RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 12017-12451 bp Feature: gene Location: 12387-12686 bp Feature: gene Location: 12748-13899 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12958-13618 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 2958-1 361 8 bp Feature: gene Location: 14347-14757 bp Feature: domain Description: Avd_like Location: 14428-14746 bp Feature: domain Description: Avd_like Location: 1 4428-1 4746 bp Feature: gene Location: 14837-15895 bp Feature: domain Description: FGE-sulfatase Location: 15074-15404 bp Feature: domain Description: FGE-sulfatase Location: 1 5074-1 5404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: QXWY01000015.1 Lachnospiraceae bacterium strain X54 Scaffold13_1, whole genome shotgun sequence (117895 bp)
Overview 1 RT 1: 21295-24905 bp Neighborhood of RT #1 [21295, 24973] PRK05912 RVT-Retrons ECF-ribofla_trS Feature: gene Location: 21295-22521 bp Feature: domain Description: PRK05912 Location: 21301-22510 bp Feature: domain Description: PRK05912 Location: 2 1301-2 2 510 bp Feature: gene Location: 22607-22828 bp Feature: gene Location: 22908-23993 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23073-23628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 3073-2 362 8 bp Feature: gene Location: 23965-24192 bp Feature: gene Location: 24353-24973 bp Feature: domain Description: ECF-ribofla_trS Location: 24374-24905 bp Feature: domain Description: ECF-ribofla_trS Location: 2 4374-2 4905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05912 (tyrosyl-tRNA synthetase; Validated), RVT-Retrons, ECF-ribofla_trS (pfam07155)

Seq: QXWY01000020.1 Lachnospiraceae bacterium strain X54 Scaffold18_1, whole genome shotgun sequence (103740 bp)
Overview 1 RT 1: 27072-32017 bp Neighborhood of RT #1 [27072, 32017] DUF4314 VirD4 RVT-GII Intron_maturas2 T4SS-DNA_transf Feature: gene Location: 27072-27332 bp Feature: domain Description: DUF4314 Location: 27090-27285 bp Feature: domain Description: DUF43 14 Location: 27090-27285 bp Feature: gene Location: 27356-28786 bp Feature: domain Description: VirD4 Location: 27551-28763 bp Feature: domain Description: VirD4 Location: 27551-28763 bp Feature: gene Location: 29391-31217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29661-30495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29661-3 0495 bp Feature: domain Description: Intron_maturas2 Location: 30603-30858 bp Feature: domain Description: Intron_maturas2 Location: 3 0603 -3 0858 bp Feature: gene Location: 31230-31637 bp Feature: domain Description: T4SS-DNA_transf Location: 31311-31473 bp Feature: domain Description: T4SS-DNA_transf Location: 3 13 11-3 1473 bp Feature: gene Location: 31652-32017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4314 (pfam14192), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), T4SS-DNA_transf (pfam02534)

Seq: QXWY01000074.1 Lachnospiraceae bacterium strain X54 Scaffold69_1, whole genome shotgun sequence (21118 bp)
Overview 1 RT 1: 10591-19642 bp Neighborhood of RT #1 [10591, 19642] HTH_XRE galliderm_ABC dnaG RVT-UNC Feature: gene Location: 10591-11016 bp Feature: domain Description: HTH_XRE Location: 10606-10774 bp Feature: domain Description: HTH_XRE Location: 10606-10774 bp Feature: gene Location: 11252-11833 bp Feature: domain Description: galliderm_ABC Location: 11336-11780 bp Feature: domain Description: galliderm_ABC Location: 11336-11780 bp Feature: gene Location: 12167-15232 bp Feature: domain Description: dnaG Location: 12254-13427 bp Feature: domain Description: dnaG Location: 12254 -134 27 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 14114-14627 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 14 114 -14 627 bp Feature: gene Location: 15259-19362 bp Feature: gene Location: 19499-19642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), galliderm_ABC (TIGR03740), dnaG (TIGR01391), RVT-UG25/RVT-UG1/RVT-UG10(RVT-UNC)

Seq: QXWY01000085.1 Lachnospiraceae bacterium strain X54 Scaffold80_1, whole genome shotgun sequence (13981 bp)
Overview 1 RT 1: 503-7438 bp Neighborhood of RT #1 [503, 7467] COG2865 RVT-UG8 RVT-UG3 Fic_N COG3177 Phage_holin_4_1 Feature: gene Location: 503-655 bp Feature: gene Location: 700-2223 bp Feature: domain Description: COG2865 Location: 754-1840 bp Feature: domain Description: COG2865 Location: 75 4-1840 bp Feature: gene Location: 2378-4420 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2921-3362 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2921-3362 bp Feature: gene Location: 4563-5894 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4872-5346 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4872-5 346 bp Feature: gene Location: 5878-6990 bp Feature: domain Description: Fic_N Location: 6001-6157 bp Feature: domain Description: Fic_N Location: 6001-615 7 bp Feature: domain Description: COG3177 Location: 6229-6952 bp Feature: domain Description: COG3177 Location: 6229-695 2 bp Feature: gene Location: 7069-7467 bp Feature: domain Description: Phage_holin_4_1 Location: 7117-7438 bp Feature: domain Description: Phage_holin_4_1 Location: 7117-7438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG8, RVT-UG3, Fic_N (pfam13784), COG3177 (Fic family protein ), Phage_holin_4_1 (pfam05105)