myRT

myRT report for GCA_009911305.1_ASM991130v1

Download annotations/find similar RTs

Seq: QXXC01000010.1 Clostridiaceae bacterium strain 1XD21-72 Scaffold10_1, whole genome shotgun sequence (106167 bp)
Overview 1 RT 1: 1-3389 bp Neighborhood of RT #1 [1, 3490] RVT-DGRs DUF16 Feature: gene Location: 1-912 bp Feature: gene Location: 1319-2551 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1616-2234 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 61 6-2234 bp Feature: gene Location: 2895-3089 bp Feature: gene Location: 3182-3490 bp Feature: domain Description: DUF16 Location: 3197-3389 bp Feature: domain Description: DUF1 6 Location: 31 97-3389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF16 (pfam01519)

Seq: QXXC01000019.1 Clostridiaceae bacterium strain 1XD21-72 Scaffold19_1, whole genome shotgun sequence (80254 bp)
Overview 1 RT 1: 5570-9456 bp 2 RT 2: 49665-54440 bp Neighborhood of RT #1 [5570, 9456] RVT-DGRs Avd_like Neighborhood of RT #2 [49665, 54440] PinE Zn_ribbon_recom RVT-DGRs Feature: gene Location: 5570-5953 bp Feature: gene Location: 5950-6249 bp Feature: gene Location: 6311-7462 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6521-7181 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 652 1-7181 bp Feature: gene Location: 7912-8322 bp Feature: domain Description: Avd_like Location: 7993-8311 bp Feature: domain Description: Avd_like Location: 7993-8311 bp Feature: gene Location: 8404-9456 bp Feature: gene Location: 49665-51032 bp Feature: domain Description: PinE Location: 49698-50289 bp Feature: domain Description: PinE Location: 49698-502 89 bp Feature: domain Description: Zn_ribbon_recom Location: 50493-50652 bp Feature: domain Description: Zn_ribbon_recom Location: 50493-50652 bp Feature: gene Location: 51045-51899 bp Feature: gene Location: 52305-53537 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52602-53220 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 52 602 -532 2 0 bp Feature: gene Location: 53887-54078 bp Feature: gene Location: 54171-54440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), PinE (COG1961), Zn_ribbon_recom (pfam13408)

Seq: QXXC01000002.1 Clostridiaceae bacterium strain 1XD21-72 Scaffold2_1, whole genome shotgun sequence (241118 bp)
Overview 1 RT 1: 46768-50896 bp Neighborhood of RT #1 [46768, 50898] RVT-DGRs Dam Feature: gene Location: 46768-47691 bp Feature: gene Location: 47743-48333 bp Feature: gene Location: 48641-49840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 48836-49559 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4883 6-49559 bp Feature: gene Location: 49812-50075 bp Feature: gene Location: 50143-50898 bp Feature: domain Description: Dam Location: 50149-50896 bp Feature: domain Description: Dam Location: 50149-50896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Dam (pfam05869)

Seq: QXXC01000044.1 Clostridiaceae bacterium strain 1XD21-72 Scaffold44_1, whole genome shotgun sequence (31661 bp)
Overview 1 RT 1: 15627-20596 bp Neighborhood of RT #1 [15627, 20715] Spr RVT-GII Intron_maturas2 HNHc DUF4315 DUF4366 Feature: gene Location: 15627-17246 bp Feature: domain Description: Spr Location: 16899-17172 bp Feature: domain Description: Spr Location: 16899-17172 bp Feature: gene Location: 17308-17727 bp Feature: gene Location: 17789-19579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18056-18866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18056-18866 bp Feature: domain Description: Intron_maturas2 Location: 18953-19268 bp Feature: domain Description: Intron_maturas2 Location: 18953-19268 bp Feature: domain Description: HNHc Note: nucleases Location: 19409-19556 bp Feature: domain Description: HNHc Note: nucleases Location: 194 09-19556 bp Feature: gene Location: 19793-20050 bp Feature: domain Description: DUF4315 Location: 19808-20042 bp Feature: domain Description: DUF4 315 Location: 19808-2004 2 bp Feature: gene Location: 20047-20715 bp Feature: domain Description: DUF4366 Location: 20230-20596 bp Feature: domain Description: DUF4 366 Location: 20230-20596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4315 (pfam14193), DUF4366 (pfam14283)

Seq: QXXC01000051.1 Clostridiaceae bacterium strain 1XD21-72 Scaffold51_1, whole genome shotgun sequence (25924 bp)
Overview 1 RT 1: 3-4110 bp 2 RT 2: 22292-25641 bp Neighborhood of RT #1 [3, 4121] TraG-D_C RVT-GII Intron_maturas2 T4SS-DNA_transf Neighborhood of RT #2 [22292, 25733] TnpV COG4646 RVT-GII group_II_RT_mat Feature: gene Location: 3-317 bp Feature: domain Description: TraG-D_C Location: 6-273 bp Feature: domain Description: TraG-D_C Location: 6-273 bp Feature: gene Location: 491-2302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755-1586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 5 -15 86 bp Feature: domain Description: Intron_maturas2 Location: 1655-1985 bp Feature: domain Description: Intron_maturas2 Location: 165 5 -1985 bp Feature: gene Location: 2304-2441 bp Feature: gene Location: 2898-4121 bp Feature: domain Description: T4SS-DNA_transf Location: 3267-4110 bp Feature: domain Description: T4SS-DNA_transf Location: 3267-4110 bp Feature: gene Location: 22292-22669 bp Feature: domain Description: TnpV Location: 22328-22658 bp Feature: domain Description: TnpV Location: 22328-2265 8 bp Feature: gene Location: 22609-23712 bp Feature: domain Description: COG4646 Location: 22612-23173 bp Feature: domain Description: COG4646 Location: 22612-23173 bp Feature: gene Location: 23900-25513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23945-24653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23945 -2465 3 bp Feature: gene Location: 25356-25733 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 25446-25641 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 25 446-25 641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), TnpV (pfam14198), COG4646 (Adenine-specific DNA methylase, N12 class ), group_II_RT_mat (TIGR04416)

Seq: QXXC01000076.1 Clostridiaceae bacterium strain 1XD21-72 Scaffold74_1, whole genome shotgun sequence (7125 bp)
Overview 1 RT 1: 3-2254 bp Neighborhood of RT #1 [3, 2262] zf-ISL3 RVT-GII HNHc TnpV Feature: gene Location: 3-194 bp Feature: domain Description: zf-ISL3 Location: 111-192 bp Feature: domain Description: zf-ISL3 Location: 111-192 bp Feature: gene Location: 413-1234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 650-1139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 50-1139 bp Feature: gene Location: 1270-1833 bp Feature: domain Description: HNHc Note: nucleases Location: 1570-1720 bp Feature: domain Description: HNHc Note: nucleases Location: 1570-1720 bp Feature: gene Location: 1942-2262 bp Feature: domain Description: TnpV Location: 2089-2254 bp Feature: domain Description: TnpV Location: 2089-2254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), TnpV (pfam14198), zf-ISL3 (pfam14690), RVT-GII

Seq: QXXC01000007.1 Clostridiaceae bacterium strain 1XD21-72 Scaffold7_1, whole genome shotgun sequence (146827 bp)
Overview 1 RT 1: 88143-94860 bp Neighborhood of RT #1 [88143, 94860] Transposase_31 RVT-Retrons asn_synth_AEB Feature: gene Location: 88143-89147 bp Feature: domain Description: Transposase_31 Location: 88176-88713 bp Feature: domain Description: Transposase_31 Location: 8817 6-887 13 bp Feature: gene Location: 89261-90169 bp Feature: gene Location: 90324-91328 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90474-91032 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9047 4-91032 bp Feature: gene Location: 91481-93340 bp Feature: domain Description: asn_synth_AEB Location: 91493-93098 bp Feature: domain Description: asn_synth_AEB Location: 91493-93098 bp Feature: gene Location: 93409-94860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_31 (pfam04754), RVT-Retrons, asn_synth_AEB (TIGR01536)