myRT

myRT report for GCA_009911335.1_ASM991133v1

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Seq: QXXD01000115.1 Clostridiaceae bacterium strain 524-25 Scaffold109_1, whole genome shotgun sequence (12785 bp)
Overview 1 RT 1: 9208-12435 bp Neighborhood of RT #1 [9208, 12782] VirD4 RVT-GII Intron_maturas2 Feature: gene Location: 9208-9561 bp Feature: gene Location: 9577-10971 bp Feature: domain Description: VirD4 Location: 9715-10864 bp Feature: domain Description: VirD4 Location: 971 5-1 0864 bp Feature: gene Location: 10968-12782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11232-12054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 232-1 2054 bp Feature: domain Description: Intron_maturas2 Location: 12126-12435 bp Feature: domain Description: Intron_maturas2 Location: 1 21 26-1 2435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), VirD4 (COG3505)

Seq: QXXD01000124.1 Clostridiaceae bacterium strain 524-25 Scaffold118_1, whole genome shotgun sequence (11573 bp)
Overview 1 RT 1: 53-11487 bp Neighborhood of RT #1 [53, 11510] COG4646 KOG0390 RVT-GII MutS_I YtxK COG4646 Feature: gene Location: 53-1738 bp Feature: domain Description: COG4646 Location: 56-617 bp Feature: domain Description: COG4646 Location: 56-617 bp Feature: domain Description: KOG0390 Location: 890-1142 bp Feature: domain Description: KOG0390 Location: 890-1142 bp Feature: gene Location: 1913-3829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2237-2951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 37-2 951 bp Feature: gene Location: 4303-4440 bp Feature: gene Location: 4521-11510 bp Feature: domain Description: MutS_I Location: 7869-8109 bp Feature: domain Description: MutS_I Location: 7869-8109 bp Feature: domain Description: YtxK Location: 8625-9375 bp Feature: domain Description: YtxK Location: 862 5-9375 bp Feature: domain Description: COG4646 Location: 9447-11487 bp Feature: domain Description: COG4646 Location: 9447-11487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MutS_I (pfam01624), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family )

Seq: QXXD01000012.1 Clostridiaceae bacterium strain 524-25 Scaffold11_1, whole genome shotgun sequence (55270 bp)
Overview 1 RT 1: 8747-14268 bp Neighborhood of RT #1 [8747, 14268] FN3 FN3 RVT-DGRs Avd_like Feature: gene Location: 8747-8944 bp Feature: gene Location: 9466-11325 bp Feature: domain Description: FN3 Location: 10153-10381 bp Feature: domain Description: FN3 Location: 10153 -103 81 bp Feature: domain Description: FN3 Location: 10444-10705 bp Feature: domain Description: FN3 Location: 10444-10705 bp Feature: gene Location: 11350-12591 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11611-12220 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11611-12220 bp Feature: gene Location: 12934-13521 bp Feature: domain Description: Avd_like Location: 13141-13414 bp Feature: domain Description: Avd_like Location: 13 141-13 414 bp Feature: gene Location: 13537-14268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), FN3 (smart00060)

Seq: QXXD01000141.1 Clostridiaceae bacterium strain 524-25 Scaffold135_1, whole genome shotgun sequence (10344 bp)
Overview 1 RT 1: 1-3550 bp Neighborhood of RT #1 [1, 3561] RVT-GII Intron_maturas2 HNHc VirD4 TrbC Feature: gene Location: 1-1818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-1090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 268-1090 bp Feature: domain Description: Intron_maturas2 Location: 1162-1510 bp Feature: domain Description: Intron_maturas2 Location: 1162-1510 bp Feature: domain Description: HNHc Note: nucleases Location: 1639-1789 bp Feature: domain Description: HNHc Note: nucleases Location: 1639-1789 bp Feature: gene Location: 1818-3239 bp Feature: domain Description: VirD4 Location: 1920-3096 bp Feature: domain Description: VirD4 Location: 1920-3096 bp Feature: gene Location: 3223-3561 bp Feature: domain Description: TrbC Location: 3259-3550 bp Feature: domain Description: TrbC Location: 3259-3550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505), TrbC (pfam04956)

Seq: QXXD01000187.1 Clostridiaceae bacterium strain 524-25 Scaffold178_1, whole genome shotgun sequence (6656 bp)
Overview 1 RT 1: 4110-6156 bp Neighborhood of RT #1 [4110, 6572] HTH_36 VirD4 RVT-GII GIIM Feature: gene Location: 4110-4331 bp Feature: domain Description: HTH_36 Location: 4116-4269 bp Feature: domain Description: HTH_36 Location: 4116-4269 bp Feature: gene Location: 4361-5305 bp Feature: domain Description: VirD4 Location: 4502-5126 bp Feature: domain Description: VirD4 Location: 45 02-5 126 bp Feature: gene Location: 5265-6572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5268-5871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 268-5 871 bp Feature: domain Description: GIIM Note: maturase Location: 5925-6156 bp Feature: domain Description: GIIM Note: maturase Location: 5 925 -615 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), VirD4 (COG3505), RVT-GII, GIIM (pfam08388)

Seq: QXXD01000001.1 Clostridiaceae bacterium strain 524-25 Scaffold1_1, whole genome shotgun sequence (112576 bp)
Overview 1 RT 1: 61552-66878 bp Neighborhood of RT #1 [61552, 66878] DUF3751 Avd_like RVT-DGRs FN3 FN3 Feature: gene Location: 61552-62331 bp Feature: domain Description: DUF3751 Location: 61555-61846 bp Feature: domain Description: DUF3751 Location: 6 1555-6 1846 bp Feature: gene Location: 62572-63204 bp Feature: domain Description: Avd_like Location: 62782-63058 bp Feature: domain Description: Avd_like Location: 6 2782-6 3058 bp Feature: gene Location: 63596-64807 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63791-64451 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 3791-6 4451 bp Feature: gene Location: 64837-66690 bp Feature: domain Description: FN3 Location: 65512-65746 bp Feature: domain Description: FN3 Location: 6 5512-6 5746 bp Feature: domain Description: FN3 Location: 65809-66046 bp Feature: domain Description: FN3 Location: 6 5809-6 6 046 bp Feature: gene Location: 66690-66878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3751 (pfam12571), Avd_like (cd16376), RVT-DGRs, FN3 (smart00060)

Seq: QXXD01000246.1 Clostridiaceae bacterium strain 524-25 Scaffold237_1, whole genome shotgun sequence (3289 bp)
Overview 1 RT 1: 1-3062 bp Neighborhood of RT #1 [1, 3172] VirD4 RVT-GII HNHc Feature: gene Location: 1-519 bp Feature: domain Description: VirD4 Location: 19-502 bp Feature: domain Description: VirD4 Location: 19-502 bp Feature: gene Location: 974-1189 bp Feature: gene Location: 1268-3172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583-2315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583-2315 bp Feature: domain Description: HNHc Note: nucleases Location: 2894-3062 bp Feature: domain Description: HNHc Note: nucleases Location: 2894-3062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), VirD4 (COG3505)

Seq: QXXD01000290.1 Clostridiaceae bacterium strain 524-25 Scaffold281_1, whole genome shotgun sequence (2174 bp)
Overview 1 RT 1: 125-1765 bp Neighborhood of RT #1 [125, 1848] RVT-GII DDE_3 Feature: gene Location: 125-826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131-458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131-458 bp Feature: gene Location: 1017-1364 bp Feature: gene Location: 1408-1848 bp Feature: domain Description: DDE_3 Location: 1444-1765 bp Feature: domain Description: DDE_3 Location: 1444-1765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_3 (pfam13358)

Seq: QXXD01000304.1 Clostridiaceae bacterium strain 524-25 Scaffold295_1, whole genome shotgun sequence (1907 bp)
Overview 1 RT 1: 3-1605 bp Neighborhood of RT #1 [3, 1733] RVT-GII HNHc Feature: gene Location: 3-242 bp Feature: gene Location: 333-1733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339-858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339 -858 bp Feature: domain Description: HNHc Note: nucleases Location: 1470-1605 bp Feature: domain Description: HNHc Note: nucleases Location: 1470-1605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QXXD01000035.1 Clostridiaceae bacterium strain 524-25 Scaffold30_1, whole genome shotgun sequence (32562 bp)
Overview 1 RT 1: 28922-32491 bp Neighborhood of RT #1 [28922, 32493] COG4932 COG4932 SpaA SpaA RVT-GII Feature: gene Location: 28922-29197 bp Feature: gene Location: 29211-31298 bp Feature: domain Description: COG4932 Location: 29247-29802 bp Feature: domain Description: COG4932 Location: 29247-29802 bp Feature: domain Description: COG4932 Location: 29826-30657 bp Feature: domain Description: COG4932 Location: 29826-30657 bp Feature: domain Description: SpaA Location: 30879-31083 bp Feature: domain Description: SpaA Location: 30879-310 83 bp Feature: domain Description: SpaA Location: 31155-31278 bp Feature: domain Description: SpaA Location: 31155-31278 bp Feature: gene Location: 32062-32493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32380-32491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32380-32491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4932 (Uncharacterized surface anchored protein ), SpaA (pfam17802), RVT-GII

Seq: QXXD01000040.1 Clostridiaceae bacterium strain 524-25 Scaffold35_1, whole genome shotgun sequence (29634 bp)
Overview 1 RT 1: 21676-29561 bp Neighborhood of RT #1 [21676, 29566] COG4983 PRK14709 DDE_Tnp_1 RVT-GII GIIM RVT-GII Feature: gene Location: 21676-23982 bp Feature: domain Description: COG4983 Location: 21679-22513 bp Feature: domain Description: COG4983 Location: 21679-22513 bp Feature: domain Description: PRK14709 Location: 22651-23905 bp Feature: domain Description: PRK14709 Location: 22651-23905 bp Feature: gene Location: 25001-25816 bp Feature: domain Description: DDE_Tnp_1 Location: 25343-25628 bp Feature: domain Description: DDE_Tnp_1 Location: 25343-25628 bp Feature: gene Location: 26403-27821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26760-27375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26760-27375 bp Feature: domain Description: GIIM Note: maturase Location: 27432-27660 bp Feature: domain Description: GIIM Note: maturase Location: 27432-27660 bp Feature: gene Location: 27938-28132 bp Feature: gene Location: 28209-28340 bp Feature: gene Location: 28551-28760 bp Feature: gene Location: 28940-29566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29279-29561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29279-29561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4983 (Uncharacterized protein, contains Primase-polymerase (Primpol) domain ), PRK14709 (hypothetical protein; Provisional), DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388)

Seq: QXXD01000043.1 Clostridiaceae bacterium strain 524-25 Scaffold38_1, whole genome shotgun sequence (29069 bp)
Overview 1 RT 1: 3042-11881 bp Neighborhood of RT #1 [3042, 11910] PrgI RVT-GII Intron_maturas2 HNHc RVT-GII Intron_maturas2 HNHc TraC-F-type N6_N4_Mtase Feature: gene Location: 3042-3437 bp Feature: domain Description: PrgI Location: 3057-3330 bp Feature: domain Description: PrgI Location: 3057-3330 bp Feature: gene Location: 3394-4386 bp Feature: gene Location: 5087-6847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5321-6137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5321-6137 bp Feature: domain Description: Intron_maturas2 Location: 6215-6506 bp Feature: domain Description: Intron_maturas2 Location: 6215-6506 bp Feature: domain Description: HNHc Note: nucleases Location: 6674-6827 bp Feature: domain Description: HNHc Note: nucleases Location: 6674-6827 bp Feature: gene Location: 7051-7296 bp Feature: gene Location: 7501-7890 bp Feature: gene Location: 7897-9726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8167-8989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8167-8989 bp Feature: domain Description: Intron_maturas2 Location: 9064-9370 bp Feature: domain Description: Intron_maturas2 Location: 9064-9370 bp Feature: domain Description: HNHc Note: nucleases Location: 9541-9691 bp Feature: domain Description: HNHc Note: nucleases Location: 9541-9691 bp Feature: gene Location: 9815-10963 bp Feature: domain Description: TraC-F-type Location: 9920-10829 bp Feature: domain Description: TraC-F-type Location: 9920-10829 bp Feature: gene Location: 10960-11910 bp Feature: domain Description: N6_N4_Mtase Location: 11029-11881 bp Feature: domain Description: N6_N4_Mtase Location: 11029-11881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_N4_Mtase (pfam01555), TraC-F-type (TIGR02746)

Seq: QXXD01000005.1 Clostridiaceae bacterium strain 524-25 Scaffold5_1, whole genome shotgun sequence (73854 bp)
Overview 1 RT 1: 33815-38015 bp Neighborhood of RT #1 [33815, 38047] Avd_like RVT-DGRs FN3 FN3 ChiA1_BD ChiA1_BD Feature: gene Location: 33815-34366 bp Feature: domain Description: Avd_like Location: 33986-34259 bp Feature: domain Description: Avd_like Location: 33986-34259 bp Feature: gene Location: 34459-34608 bp Feature: gene Location: 34702-35772 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34942-35539 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34942-35539 bp Feature: gene Location: 35772-37592 bp Feature: domain Description: FN3 Location: 36408-36642 bp Feature: domain Description: FN3 Location: 36408-36642 bp Feature: domain Description: FN3 Location: 36705-36963 bp Feature: domain Description: FN3 Location: 36705-36963 bp Feature: gene Location: 37589-38047 bp Feature: domain Description: ChiA1_BD Location: 37751-37874 bp Feature: domain Description: ChiA1_BD Location: 37751-37874 bp Feature: domain Description: ChiA1_BD Location: 37937-38015 bp Feature: domain Description: ChiA1_BD Location: 37937-38015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, FN3 (smart00060), ChiA1_BD (cd12214)