myRT

myRT report for GCA_009911595.1_ASM991159v1

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Seq: QWKG01000121.1 Colidextribacter sp. OB.20 Scaffold111_1, whole genome shotgun sequence (3713 bp)
Overview 1 RT 1: 98-3667 bp Neighborhood of RT #1 [98, 3711] COG4584 RVT-GII TraC-F-type Feature: gene Location: 98-1321 bp Feature: domain Description: COG4584 Location: 110-947 bp Feature: domain Description: COG4584 Location: 1 1 0-947 bp Feature: gene Location: 1366-2196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1684-2143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 684-21 43 bp Feature: gene Location: 2521-2697 bp Feature: gene Location: 2908-3711 bp Feature: domain Description: TraC-F-type Location: 3007-3667 bp Feature: domain Description: TraC-F-type Location: 3007-3667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TraC-F-type (TIGR02746), COG4584 (Transposase )

Seq: QWKG01000133.1 Colidextribacter sp. OB.20 Scaffold123_1, whole genome shotgun sequence (2070 bp)
Overview 1 RT 1: 36-2068 bp Neighborhood of RT #1 [36, 2068] RVT-GII Feature: gene Location: 36-1415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-1080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-1080 bp Feature: gene Location: 1772-2068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QWKG01000144.1 Colidextribacter sp. OB.20 Scaffold135_1, whole genome shotgun sequence (1327 bp)
Overview 1 RT 1: 2-1326 bp Neighborhood of RT #1 [2, 1326] RVT-GII Feature: gene Location: 2-904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266-722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266-722 bp Feature: gene Location: 1093-1326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QWKG01000052.1 Colidextribacter sp. OB.20 Scaffold43_1, whole genome shotgun sequence (30451 bp)
Overview 1 RT 1: 17783-21971 bp Neighborhood of RT #1 [17783, 21979] MobC RVT-GII RepA_N AAA_31 Feature: gene Location: 17783-17938 bp Feature: gene Location: 18090-18398 bp Feature: domain Description: MobC Location: 18258-18390 bp Feature: domain Description: MobC Location: 18258-18390 bp Feature: gene Location: 18424-21342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18742-19447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1874 2-194 4 7 bp Feature: domain Description: RepA_N Location: 20515-20734 bp Feature: domain Description: RepA_N Location: 20515-20734 bp Feature: gene Location: 21368-21601 bp Feature: gene Location: 21830-21979 bp Feature: domain Description: AAA_31 Location: 21869-21971 bp Feature: domain Description: AAA_31 Location: 21869-21971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), RVT-GII, RepA_N (pfam06970), AAA_31 (pfam13614)

Seq: QWKG01000053.1 Colidextribacter sp. OB.20 Scaffold44_1, whole genome shotgun sequence (30432 bp)
Overview 1 RT 1: 2-4039 bp Neighborhood of RT #1 [2, 4149] FN3 FN3 RVT-DGRs Avd_like Feature: gene Location: 2-1759 bp Feature: domain Description: FN3 Location: 731-929 bp Feature: domain Description: FN3 Location: 731-929 bp Feature: domain Description: FN3 Location: 986-1223 bp Feature: domain Description: FN3 Location: 986-1223 bp Feature: gene Location: 1793-3112 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2096-2756 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2096-275 6 bp Feature: gene Location: 3193-3351 bp Feature: gene Location: 3463-4149 bp Feature: domain Description: Avd_like Location: 3769-4039 bp Feature: domain Description: Avd_like Location: 3769-4039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, FN3 (smart00060), Avd_like (cd16376)

Seq: QWKG01000057.1 Colidextribacter sp. OB.20 Scaffold48_1, whole genome shotgun sequence (29049 bp)
Overview 1 RT 1: 3-1634 bp Neighborhood of RT #1 [3, 1645] RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf TrbC Feature: gene Location: 3-842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-120 bp Feature: domain Description: Intron_maturas2 Location: 231-498 bp Feature: domain Description: Intron_maturas2 Location: 231-498 bp Feature: domain Description: HNHc Note: nucleases Location: 669-819 bp Feature: domain Description: HNHc Note: nucleases Location: 6 6 9-819 bp Feature: gene Location: 856-1326 bp Feature: domain Description: T4SS-DNA_transf Location: 958-1156 bp Feature: domain Description: T4SS-DNA_transf Location: 958-1156 bp Feature: gene Location: 1310-1645 bp Feature: domain Description: TrbC Location: 1343-1634 bp Feature: domain Description: TrbC Location: 1343-16 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbC (pfam04956), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), T4SS-DNA_transf (pfam02534)

Seq: QWKG01000097.1 Colidextribacter sp. OB.20 Scaffold88_1, whole genome shotgun sequence (10918 bp)
Overview 1 RT 1: 6162-10850 bp Neighborhood of RT #1 [6162, 10882] RpoE RVT-GII Intron_maturas2 HNHc SR_TndX_transposase Feature: gene Location: 6162-6620 bp Feature: domain Description: RpoE Location: 6198-6597 bp Feature: domain Description: RpoE Location: 6198-6597 bp Feature: gene Location: 7125-8624 bp Feature: gene Location: 8628-10178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8748-9450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87 48-9450 bp Feature: domain Description: Intron_maturas2 Location: 9522-9870 bp Feature: domain Description: Intron_maturas2 Location: 9522-987 0 bp Feature: domain Description: HNHc Note: nucleases Location: 10002-10149 bp Feature: domain Description: HNHc Note: nucleases Location: 10002-10149 bp Feature: gene Location: 10175-10360 bp Feature: gene Location: 10406-10882 bp Feature: domain Description: SR_TndX_transposase Location: 10439-10850 bp Feature: domain Description: SR_TndX_transposase Location: 10439-10850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QWKG01000014.1 Colidextribacter sp. OB.20 Scaffold8_1, whole genome shotgun sequence (83415 bp)
Overview 1 RT 1: 66958-69972 bp Neighborhood of RT #1 [66958, 69972] RVT-DGRs ChiA1_BD ChiA1_BD Feature: gene Location: 66958-67422 bp Feature: gene Location: 67432-67692 bp Feature: gene Location: 67828-69003 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 68107-68716 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 68 107-68 716 bp Feature: gene Location: 68964-69584 bp Feature: domain Description: ChiA1_BD Location: 69279-69402 bp Feature: domain Description: ChiA1_BD Location: 69279-69402 bp Feature: domain Description: ChiA1_BD Location: 69465-69543 bp Feature: domain Description: ChiA1_BD Location: 69465-69543 bp Feature: gene Location: 69574-69972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ChiA1_BD (cd12214)

Seq: QWKG01000108.1 Colidextribacter sp. OB.20 Scaffold98_1, whole genome shotgun sequence (8185 bp)
Overview 1 RT 1: 31-5706 bp Neighborhood of RT #1 [31, 5706] beta_clamp DEXDc_RapA DEXDc_RapA SF2_C_SNF RVT-GII HNHc Feature: gene Location: 31-1134 bp Feature: domain Description: beta_clamp Location: 34-943 bp Feature: domain Description: beta_clamp Location: 34-9 43 bp Feature: gene Location: 1149-3284 bp Feature: domain Description: DEXDc_RapA Location: 1203-1323 bp Feature: domain Description: DEXDc_RapA Location: 1203-1323 bp Feature: domain Description: DEXDc_RapA Location: 1791-2043 bp Feature: domain Description: DEXDc_RapA Location: 179 1-2043 bp Feature: domain Description: SF2_C_SNF Location: 2463-2820 bp Feature: domain Description: SF2_C_SNF Location: 2463-2820 bp Feature: gene Location: 3462-5339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3780-4518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3780-4518 bp Feature: domain Description: HNHc Note: nucleases Location: 5094-5229 bp Feature: domain Description: HNHc Note: nucleases Location: 509 4-5229 bp Feature: gene Location: 5373-5552 bp Feature: gene Location: 5572-5706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)