myRT

myRT report for GCA_009912515.1_ASM991251v1

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Seq: WNDU01000019.1 Pseudomonas sp. isolate cluster_DBSCAN_round44_0 GAK37_19, whole genome shotgun sequence (28431 bp)
Overview 1 RT 1: 21699-28168 bp Neighborhood of RT #1 [21699, 28168] PRK10770 LptD RVT_N RVT-GII GIIM HNH Feature: gene Location: 21699-22997 bp Feature: domain Description: PRK10770 Location: 21741-22947 bp Feature: domain Description: PRK1 0770 Location: 21 741 -22947 bp Feature: gene Location: 23014-25827 bp Feature: domain Description: LptD Location: 23374-25810 bp Feature: domain Description: LptD Location: 23374-2581 0 bp Feature: gene Location: 25971-27680 bp Feature: RT Description: RVT_N Location: 26028-26271 bp Feature: RT Description: RVT_N Location: 26028-26271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26316-26952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631 6-26952 bp Feature: domain Description: GIIM Note: maturase Location: 27003-27237 bp Feature: domain Description: GIIM Note: maturase Location: 27003-27237 bp Feature: domain Description: HNH Note: nucleases Location: 27489-27627 bp Feature: domain Description: HNH Note: nucleases Location: 27489-27627 bp Feature: gene Location: 28004-28168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: WNDU01000072.1 Pseudomonas sp. isolate cluster_DBSCAN_round44_0 GAK37_72, whole genome shotgun sequence (18246 bp)
Overview 1 RT 1: 16406-18243 bp Neighborhood of RT #1 [16406, 18243] rpmG RpmB RVT-GII GIIM Feature: gene Location: 16406-16561 bp Feature: domain Description: rpmG Location: 16409-16553 bp Feature: domain Description: rpmG Location: 16409-16553 bp Feature: gene Location: 16573-16806 bp Feature: domain Description: RpmB Location: 16576-16792 bp Feature: domain Description: RpmB Location: 16576-16792 bp Feature: gene Location: 17270-17992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17273-17516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 73-17516 bp Feature: domain Description: GIIM Note: maturase Location: 17567-17801 bp Feature: domain Description: GIIM Note: maturase Location: 17567-17801 bp Feature: gene Location: 18112-18243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpmG (PRK00595), RpmB (COG0227), RVT-GII, GIIM (pfam08388)

Seq: WNDU01000095.1 Pseudomonas sp. isolate cluster_DBSCAN_round44_0 GAK37_95, whole genome shotgun sequence (16076 bp)
Overview 1 RT 1: 11460-15958 bp Neighborhood of RT #1 [11460, 15984] PRK00024 PBP2_DppA_like RVT_N RVT-GII Feature: gene Location: 11460-12230 bp Feature: domain Description: PRK00024 Location: 11559-12228 bp Feature: domain Description: PRK00024 Location: 11559-12228 bp Feature: gene Location: 12328-13917 bp Feature: domain Description: PBP2_DppA_like Location: 12400-13867 bp Feature: domain Description: PBP2_DppA_like Location: 12400-13 867 bp Feature: gene Location: 15295-15984 bp Feature: RT Description: RVT_N Location: 15352-15592 bp Feature: RT Description: RVT_N Location: 153 52-15592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15640-15958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15640-15958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), PBP2_DppA_like (cd08493), RVT_N (pfam13655), RVT-GII