myRT

myRT report for GCA_009913725.1_ASM991372v1

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Seq: PTTG01000012.1 Escherichia coli strain 1001 scaffold12, whole genome shotgun sequence (17488 bp)
Overview 1 RT 1: 14501-17485 bp Neighborhood of RT #1 [14501, 17485] DcuC RVT-GII Feature: gene Location: 14501-15862 bp Feature: domain Description: DcuC Location: 14504-15836 bp Feature: domain Description: DcuC Location: 1 4504-1 5836 bp Feature: gene Location: 15915-16286 bp Feature: gene Location: 16508-16954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16814-16916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 681 4-1 691 6 bp Feature: gene Location: 17002-17151 bp Feature: gene Location: 17309-17485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII

Seq: PTTG01000033.1 Escherichia coli strain 1001 scaffold33, whole genome shotgun sequence (391626 bp)
Overview 1 RT 1: 194140-197205 bp 2 RT 2: 220572-224893 bp Neighborhood of RT #1 [194140, 197205] RVT-GII GIIM RVT-GII Neighborhood of RT #2 [220572, 224946] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 194140-194310 bp Feature: gene Location: 194448-194627 bp Feature: gene Location: 194726-195247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194732-195014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194732 -195014 bp Feature: domain Description: GIIM Note: maturase Location: 195062-195242 bp Feature: domain Description: GIIM Note: maturase Location: 195062 -1952 42 bp Feature: gene Location: 195275-195814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195605-195683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195605-195683 bp Feature: gene Location: 195845-196042 bp Feature: gene Location: 196300-197205 bp Feature: gene Location: 220572-221396 bp Feature: gene Location: 221523-221813 bp Feature: domain Description: PHA02517 Location: 221529-221748 bp Feature: domain Description: PHA02 517 Location: 2 2 152 9-2 2 1748 bp Feature: gene Location: 222405-223928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222678-223410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 2 678-2 2 3410 bp Feature: domain Description: GIIM Note: maturase Location: 223485-223683 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 3485-2 2 3683 bp Feature: gene Location: 224105-224491 bp Feature: domain Description: PHA02517 Location: 224108-224489 bp Feature: domain Description: PHA02 517 Location: 2 2 4108-2 2 4489 bp Feature: gene Location: 224596-224946 bp Feature: domain Description: InsE Location: 224605-224893 bp Feature: domain Description: InsE Location: 2 2 4605-2 2 4893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: PTTG01000005.1 Escherichia coli strain 1001 scaffold5, whole genome shotgun sequence (221723 bp)
Overview 1 RT 1: 108176-114207 bp Neighborhood of RT #1 [108176, 114207] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 108176-109096 bp Feature: domain Description: AbiEii Location: 108218-108959 bp Feature: domain Description: AbiEii Location: 108218-108959 bp Feature: gene Location: 109083-109886 bp Feature: domain Description: AbiEi_3_N Location: 109116-109377 bp Feature: domain Description: AbiEi_3 _N Location: 109116-1093 77 bp Feature: domain Description: AbiEi_3 Location: 109389-109845 bp Feature: domain Description: AbiEi_3 Location: 1093 89-109845 bp Feature: gene Location: 110181-113390 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 110709-111198 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 110709-111198 bp Feature: domain Description: nitrilase Location: 112704-113301 bp Feature: domain Description: nitrilase Location: 112704-113 3 01 bp Feature: gene Location: 113551-113691 bp Feature: domain Description: Phage_ASH Location: 113578-113671 bp Feature: domain Description: Phage_ASH Location: 113 578-113 671 bp Feature: gene Location: 113737-114207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: PTTG01000007.1 Escherichia coli strain 1001 scaffold7, whole genome shotgun sequence (38569 bp)
Overview 1 RT 1: 33149-36115 bp Neighborhood of RT #1 [33149, 36312] SLATT_5 RVT-UG17 DUF4094 Peptidase_S74 Feature: gene Location: 33149-33289 bp Feature: gene Location: 33303-33845 bp Feature: domain Description: SLATT_5 Location: 33309-33825 bp Feature: domain Description: SLATT_5 Location: 33309-33825 bp Feature: gene Location: 33832-35202 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34060-34666 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 34 060-34 666 bp Feature: gene Location: 35310-35597 bp Feature: gene Location: 35608-36312 bp Feature: domain Description: DUF4094 Location: 35650-35740 bp Feature: domain Description: DUF4 094 Location: 35650-3574 0 bp Feature: domain Description: Peptidase_S74 Location: 35956-36115 bp Feature: domain Description: Peptidase_S74 Location: 35956-36115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, DUF4094 (pfam13334), Peptidase_S74 (pfam13884)