myRT

myRT report for GCA_009915135.1_ASM991513v1

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Seq: JAABLV010000010.1 Proteus sp. G2671 contig10, whole genome shotgun sequence (58093 bp)
Overview 1 RT 1: 628-3218 bp Neighborhood of RT #1 [628, 3346] RVT-GII Intron_maturas2 HNHc zf-C4_ClpX Feature: gene Location: 628-2532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919-1753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 9-1 753 bp Feature: domain Description: Intron_maturas2 Location: 1864-2266 bp Feature: domain Description: Intron_maturas2 Location: 1 864-2266 bp Feature: domain Description: HNHc Note: nucleases Location: 2311-2473 bp Feature: domain Description: HNHc Note: nucleases Location: 231 1 -2473 bp Feature: gene Location: 2535-3008 bp Feature: gene Location: 3023-3346 bp Feature: domain Description: zf-C4_ClpX Location: 3113-3218 bp Feature: domain Description: zf-C4_ClpX Location: 31 1 3-321 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), zf-C4_ClpX (smart00994)

Seq: JAABLV010000002.1 Proteus sp. G2671 contig2, whole genome shotgun sequence (6709 bp)
Overview 1 RT 1: 3047-6580 bp Neighborhood of RT #1 [3047, 6639] ERF PRK09010 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3047-3661 bp Feature: domain Description: ERF Location: 3059-3467 bp Feature: domain Description: ERF Location: 3059-3467 bp Feature: gene Location: 3661-4113 bp Feature: domain Description: PRK09010 Location: 3664-4036 bp Feature: domain Description: PRK09010 Location: 3664-4036 bp Feature: gene Location: 4735-6639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5026-5860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502 6-5860 bp Feature: domain Description: Intron_maturas2 Location: 5971-6373 bp Feature: domain Description: Intron_maturas2 Location: 5971-6373 bp Feature: domain Description: HNHc Note: nucleases Location: 6418-6580 bp Feature: domain Description: HNHc Note: nucleases Location: 6418-6580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ERF (pfam04404), PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAABLV010000021.1 Proteus sp. G2671 contig21, whole genome shotgun sequence (190883 bp)
Overview 1 RT 1: 94848-98417 bp Neighborhood of RT #1 [94848, 98417] SmpB RVT-UG11 Feature: gene Location: 94848-95330 bp Feature: domain Description: SmpB Location: 94878-95325 bp Feature: domain Description: SmpB Location: 94878-953 25 bp Feature: gene Location: 95920-96303 bp Feature: gene Location: 96328-97095 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 96463-96913 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 96463 -96913 bp Feature: gene Location: 97944-98237 bp Feature: gene Location: 98274-98417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11

Seq: JAABLV010000024.1 Proteus sp. G2671 contig24, whole genome shotgun sequence (354437 bp)
Overview 1 RT 1: 67370-72386 bp Neighborhood of RT #1 [67370, 72556] MgrB PRK10238 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 67370-67546 bp Feature: domain Description: MgrB Location: 67451-67532 bp Feature: domain Description: MgrB Location: 674 51-67532 bp Feature: gene Location: 67700-69082 bp Feature: domain Description: PRK10238 Location: 67712-69038 bp Feature: domain Description: PRK10238 Location: 67712-69038 bp Feature: gene Location: 69338-70276 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69440-70040 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 694 4 0-7004 0 bp Feature: gene Location: 70278-71903 bp Feature: domain Description: COG3950 Location: 70473-71817 bp Feature: domain Description: COG3950 Location: 704 73-71817 bp Feature: gene Location: 71906-72556 bp Feature: domain Description: TIGR02646 Location: 71972-72386 bp Feature: domain Description: TIGR0264 6 Location: 71972-72386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MgrB (pfam13998), PRK10238 (aromatic amino acid transporter AroP), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: JAABLV010000005.1 Proteus sp. G2671 contig5, whole genome shotgun sequence (146465 bp)
Overview 1 RT 1: 140258-146336 bp Neighborhood of RT #1 [140258, 146395] uvrA PRK09010 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 140258-143152 bp Feature: domain Description: uvrA Location: 140321-143141 bp Feature: domain Description: uvrA Location: 140321-143141 bp Feature: gene Location: 143237-143869 bp Feature: domain Description: PRK09010 Location: 143348-143867 bp Feature: domain Description: PRK09010 Location: 143348-143867 bp Feature: gene Location: 144491-146395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144782-145616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144782-145 616 bp Feature: domain Description: Intron_maturas2 Location: 145727-146129 bp Feature: domain Description: Intron_maturas2 Location: 145 727-146129 bp Feature: domain Description: HNHc Note: nucleases Location: 146174-146336 bp Feature: domain Description: HNHc Note: nucleases Location: 146174-146336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT uvrA (PRK00349), PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAABLV010000009.1 Proteus sp. G2671 contig9, whole genome shotgun sequence (31374 bp)
Overview 1 RT 1: 628-4508 bp Neighborhood of RT #1 [628, 4519] RVT-GII Intron_maturas2 HNHc PRK11639 lexA Feature: gene Location: 628-2532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919-1753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919-1753 bp Feature: domain Description: Intron_maturas2 Location: 1864-2266 bp Feature: domain Description: Intron_maturas2 Location: 186 4-226 6 bp Feature: domain Description: HNHc Note: nucleases Location: 2311-2473 bp Feature: domain Description: HNHc Note: nucleases Location: 2311-2473 bp Feature: gene Location: 2940-3470 bp Feature: domain Description: PRK11639 Location: 2946-3426 bp Feature: domain Description: PRK116 39 Location: 2946 -3426 bp Feature: gene Location: 3908-4519 bp Feature: domain Description: lexA Location: 3911-4508 bp Feature: domain Description: lexA Location: 3911-4508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK11639 (zinc uptake transcriptional repressor Zur), lexA (TIGR00498)