myRT

myRT report for GCA_009915235.1_ASM991523v1

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Seq: JAABLU010000002.1 Proteus sp. G2672 contig2, whole genome shotgun sequence (29691 bp)
Overview 1 RT 1: 25185-29018 bp Neighborhood of RT #1 [25185, 29077] lexA PRK11639 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 25185-25796 bp Feature: domain Description: lexA Location: 25188-25785 bp Feature: domain Description: lexA Location: 251 88-25785 bp Feature: gene Location: 26234-26764 bp Feature: domain Description: PRK11639 Location: 26240-26720 bp Feature: domain Description: PRK1 1 639 Location: 26240-26720 bp Feature: gene Location: 27173-29077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27464-28298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27464-28298 bp Feature: domain Description: Intron_maturas2 Location: 28409-28811 bp Feature: domain Description: Intron_maturas2 Location: 28409-2881 1 bp Feature: domain Description: HNHc Note: nucleases Location: 28856-29018 bp Feature: domain Description: HNHc Note: nucleases Location: 28856-2901 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lexA (TIGR00498), PRK11639 (zinc uptake transcriptional repressor Zur), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAABLU010000022.1 Proteus sp. G2672 contig22, whole genome shotgun sequence (37852 bp)
Overview 1 RT 1: 9596-15511 bp Neighborhood of RT #1 [9596, 15516] groEL RVT_N RVT-GII GIIM HNHc DUF4156 Feature: gene Location: 9596-11242 bp Feature: domain Description: groEL Location: 9602-11225 bp Feature: domain Description: groEL Location: 9602 -112 2 5 bp Feature: gene Location: 12043-12273 bp Feature: gene Location: 12335-14098 bp Feature: domain Description: RVT_N Location: 12407-12650 bp Feature: domain Description: RVT_N Location: 12 407-12 650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12695-13340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 695-13340 bp Feature: domain Description: GIIM Note: maturase Location: 13391-13625 bp Feature: domain Description: GIIM Note: maturase Location: 13391-1362 5 bp Feature: domain Description: HNHc Note: nucleases Location: 13841-14003 bp Feature: domain Description: HNHc Note: nucleases Location: 13841-14003 bp Feature: gene Location: 14095-14475 bp Feature: gene Location: 15172-15516 bp Feature: domain Description: DUF4156 Location: 15241-15511 bp Feature: domain Description: DUF4156 Location: 152 41-15511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4156 (pfam13698)

Seq: JAABLU010000029.1 Proteus sp. G2672 contig29, whole genome shotgun sequence (110391 bp)
Overview 1 RT 1: 104184-110262 bp Neighborhood of RT #1 [104184, 110321] uvrA PRK09010 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 104184-107078 bp Feature: domain Description: uvrA Location: 104247-107067 bp Feature: domain Description: uvrA Location: 104247-107067 bp Feature: gene Location: 107163-107795 bp Feature: domain Description: PRK09010 Location: 107274-107793 bp Feature: domain Description: PRK09010 Location: 107274-107793 bp Feature: gene Location: 108417-110321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108708-109542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108708-109542 bp Feature: domain Description: Intron_maturas2 Location: 109653-110055 bp Feature: domain Description: Intron_maturas2 Location: 109653 -110055 bp Feature: domain Description: HNHc Note: nucleases Location: 110100-110262 bp Feature: domain Description: HNHc Note: nucleases Location: 110100-110262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT uvrA (PRK00349), PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAABLU010000032.1 Proteus sp. G2672 contig32, whole genome shotgun sequence (307408 bp)
Overview 1 RT 1: 282998-288170 bp Neighborhood of RT #1 [282998, 288184] TIGR02646 COG3950 RVT-Retrons PRK10238 MgrB Feature: gene Location: 282998-283648 bp Feature: domain Description: TIGR02646 Location: 283064-283478 bp Feature: domain Description: TIGR0264 6 Location: 283064 -2834 78 bp Feature: gene Location: 283651-285276 bp Feature: domain Description: COG3950 Location: 283846-285190 bp Feature: domain Description: COG3950 Location: 28384 6-285190 bp Feature: gene Location: 285278-286216 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 285380-285980 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 285380-285980 bp Feature: gene Location: 286472-287854 bp Feature: domain Description: PRK10238 Location: 286484-287810 bp Feature: domain Description: PRK10238 Location: 2864 84 -287810 bp Feature: gene Location: 288008-288184 bp Feature: domain Description: MgrB Location: 288089-288170 bp Feature: domain Description: MgrB Location: 288089-288170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, PRK10238 (aromatic amino acid transporter AroP), MgrB (pfam13998)

Seq: JAABLU010000036.1 Proteus sp. G2672 contig36, whole genome shotgun sequence (257640 bp)
Overview 1 RT 1: 239519-243088 bp Neighborhood of RT #1 [239519, 243088] SmpB RVT-UG11 Feature: gene Location: 239519-240001 bp Feature: domain Description: SmpB Location: 239549-239996 bp Feature: domain Description: SmpB Location: 2395 49-239996 bp Feature: gene Location: 240591-240974 bp Feature: gene Location: 240999-241766 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 241134-241584 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 241134-2415 84 bp Feature: gene Location: 242615-242908 bp Feature: gene Location: 242945-243088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11

Seq: JAABLU010000006.1 Proteus sp. G2672 contig6, whole genome shotgun sequence (15692 bp)
Overview 1 RT 1: 71-3481 bp Neighborhood of RT #1 [71, 3672] RVT-GII Intron_maturas2 HNHc PRK09010 ERF Feature: gene Location: 71-1975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 2-1196 bp Feature: domain Description: Intron_maturas2 Location: 1307-1709 bp Feature: domain Description: Intron_maturas2 Location: 1307-1709 bp Feature: domain Description: HNHc Note: nucleases Location: 1754-1916 bp Feature: domain Description: HNHc Note: nucleases Location: 1754-1916 bp Feature: gene Location: 2576-3061 bp Feature: domain Description: PRK09010 Location: 2579-3038 bp Feature: domain Description: PRK09010 Location: 2579-3038 bp Feature: gene Location: 3061-3672 bp Feature: domain Description: ERF Location: 3073-3481 bp Feature: domain Description: ERF Location: 3073-3481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK09010 (single-stranded DNA-binding protein; Provisional), ERF (pfam04404)

Seq: JAABLU010000007.1 Proteus sp. G2672 contig7, whole genome shotgun sequence (59831 bp)
Overview 1 RT 1: 615-5424 bp Neighborhood of RT #1 [615, 5426] RVT-GII Intron_maturas2 HNHc Arm-DNA-bind_1 INT_Lambda_C PRK07006 Feature: gene Location: 615-2519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 906-1740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 906-17 40 bp Feature: domain Description: Intron_maturas2 Location: 1851-2253 bp Feature: domain Description: Intron_maturas2 Location: 1851-2253 bp Feature: domain Description: HNHc Note: nucleases Location: 2298-2460 bp Feature: domain Description: HNHc Note: nucleases Location: 2298-2460 bp Feature: gene Location: 2930-4063 bp Feature: domain Description: Arm-DNA-bind_1 Location: 2933-3146 bp Feature: domain Description: Arm-DNA-bind_1 Location: 2933-3146 bp Feature: domain Description: INT_Lambda_C Location: 3530-4046 bp Feature: domain Description: INT_Lambda_C Location: 3530-4046 bp Feature: gene Location: 4173-5426 bp Feature: domain Description: PRK07006 Location: 4200-5424 bp Feature: domain Description: PRK07 006 Location: 4200-5424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_1 (pfam09003), INT_Lambda_C (cd00800), PRK07006 (isocitrate dehydrogenase; Reviewed)