myRT

myRT report for GCA_009917305.1_ASM991730v1

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Seq: QWLF01000009.1 Acutalibacter muris strain WYJ34-Z31 Scaffold9_1, whole genome shotgun sequence (140187 bp)
Overview 1 RT 1: 7740-11018 bp 2 RT 2: 125667-131397 bp Neighborhood of RT #1 [7740, 11086] HTH_31 HTH_31 RVT-Retrons T5orf172 PhdYeFM_antitox Neighborhood of RT #2 [125667, 131531] Maff2 RVT-GII HNHc Maff2 VirD4 Feature: gene Location: 7740-8231 bp Feature: domain Description: HTH_31 Location: 7863-8034 bp Feature: domain Description: HTH_31 Location: 7863-8034 bp Feature: domain Description: HTH_31 Location: 8079-8220 bp Feature: domain Description: HTH_31 Location: 8079-8220 bp Feature: gene Location: 8730-8969 bp Feature: gene Location: 9059-9985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9140-9752 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91 40-9752 bp Feature: gene Location: 9998-10669 bp Feature: domain Description: T5orf172 Location: 10016-10307 bp Feature: domain Description: T5orf1 72 Location: 1 001 6-1 0307 bp Feature: gene Location: 10823-11086 bp Feature: domain Description: PhdYeFM_antitox Location: 10835-11018 bp Feature: domain Description: PhdYeFM_antitox Location: 1 0835-1 1 01 8 bp Feature: gene Location: 125667-126536 bp Feature: gene Location: 126551-126649 bp Feature: domain Description: Maff2 Location: 126554-126644 bp Feature: domain Description: Maff2 Location: 1 26554-1 26644 bp Feature: gene Location: 126808-128682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127135-127873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 271 35-1 27873 bp Feature: domain Description: HNHc Note: nucleases Location: 128413-128569 bp Feature: domain Description: HNHc Note: nucleases Location: 1 2841 3-1 28569 bp Feature: gene Location: 129438-129569 bp Feature: domain Description: Maff2 Location: 129441-129567 bp Feature: domain Description: Maff2 Location: 1 29441 -1 29567 bp Feature: gene Location: 129804-131531 bp Feature: domain Description: VirD4 Location: 130005-131397 bp Feature: domain Description: VirD4 Location: 1 30005-1 31 397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhdYeFM_antitox (pfam02604), HTH_31 (pfam13560), RVT-Retrons, T5orf172 (smart00974), Maff2 (pfam12750), RVT-GII, HNHc (smart00507), VirD4 (COG3505)

Seq: QWLF01000001.1 Acutalibacter muris strain WYJ34-Z31 Scaffold1_1, whole genome shotgun sequence (426212 bp)
Overview 1 RT 1: 367227-370607 bp Neighborhood of RT #1 [367227, 370607] HTH_36 T4SS-DNA_transf RVT_N RVT-GII GIIM Mob_Pre Feature: gene Location: 367227-367499 bp Feature: domain Description: HTH_36 Location: 367260-367419 bp Feature: domain Description: HTH_36 Location: 3672 60-367419 bp Feature: gene Location: 367492-368013 bp Feature: domain Description: T4SS-DNA_transf Location: 367594-367819 bp Feature: domain Description: T4SS-DNA_transf Location: 367594-367819 bp Feature: gene Location: 368018-369712 bp Feature: RT Description: RVT_N Location: 368111-368345 bp Feature: RT Description: RVT_N Location: 368111-368345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368399-369059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368399-369059 bp Feature: domain Description: GIIM Note: maturase Location: 369110-369347 bp Feature: domain Description: GIIM Note: maturase Location: 369110-369347 bp Feature: gene Location: 369733-369849 bp Feature: domain Description: Mob_Pre Location: 369736-369850 bp Feature: domain Description: Mob_Pre Location: 369736-369850 bp Feature: gene Location: 370344-370607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), T4SS-DNA_transf (pfam02534), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Mob_Pre (pfam01076)

Seq: QWLF01000006.1 Acutalibacter muris strain WYJ34-Z31 Scaffold6_1, whole genome shotgun sequence (146539 bp)
Overview 1 RT 1: 63632-67566 bp Neighborhood of RT #1 [63632, 67566] RVT-DGRs Feature: gene Location: 63632-64864 bp Feature: gene Location: 64930-65349 bp Feature: gene Location: 65743-66858 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66022-66628 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66022-66628 bp Feature: gene Location: 66871-67251 bp Feature: gene Location: 67252-67566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QWLF01000014.1 Acutalibacter muris strain WYJ34-Z31 Scaffold14_1, whole genome shotgun sequence (75336 bp)
Overview 1 RT 1: 2175-7141 bp Neighborhood of RT #1 [2175, 7141] RVT-DGRs Feature: gene Location: 2175-2585 bp Feature: gene Location: 3209-3388 bp Feature: gene Location: 3393-4617 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3603-4221 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3603-4 221 bp Feature: gene Location: 4945-5268 bp Feature: gene Location: 5312-7141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QWLF01000019.1 Acutalibacter muris strain WYJ34-Z31 Scaffold19_1, whole genome shotgun sequence (52891 bp)
Overview 1 RT 1: 10027-14378 bp Neighborhood of RT #1 [10027, 14378] DUF4376 RVT-DGRs Avd_like Feature: gene Location: 10027-10515 bp Feature: domain Description: DUF4376 Location: 10141-10369 bp Feature: domain Description: DUF4376 Location: 10141-10369 bp Feature: gene Location: 10512-12230 bp Feature: gene Location: 12230-13357 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12437-13103 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12437-13103 bp Feature: gene Location: 13720-14151 bp Feature: domain Description: Avd_like Location: 13765-14101 bp Feature: domain Description: Avd_like Location: 13765 -14101 bp Feature: gene Location: 14148-14378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4376 (pfam14301), RVT-DGRs, Avd_like (cd16376)

Seq: QWLF01000020.1 Acutalibacter muris strain WYJ34-Z31 Scaffold20_1, whole genome shotgun sequence (52400 bp)
Overview 1 RT 1: 6284-12000 bp Neighborhood of RT #1 [6284, 12000] ChiA1_BD RVT-DGRs Feature: gene Location: 6284-6721 bp Feature: gene Location: 6711-7331 bp Feature: domain Description: ChiA1_BD Location: 7026-7152 bp Feature: domain Description: ChiA1_BD Location: 7026 -7152 bp Feature: gene Location: 7292-8353 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7451-8066 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7451-806 6 bp Feature: gene Location: 8849-9322 bp Feature: gene Location: 9502-12000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), RVT-DGRs

Seq: QWLF01000042.1 Acutalibacter muris strain WYJ34-Z31 Scaffold42_1, whole genome shotgun sequence (22640 bp)
Overview 1 RT 1: 16064-22357 bp Neighborhood of RT #1 [16064, 22479] MdlB DUF772 RVT_N RVT-GII GIIM RpoE Feature: gene Location: 16064-17725 bp Feature: domain Description: MdlB Location: 16085-17717 bp Feature: domain Description: MdlB Location: 16085-17 7 17 bp Feature: gene Location: 18332-19298 bp Feature: domain Description: DUF772 Location: 18473-18695 bp Feature: domain Description: DUF7 7 2 Location: 1847 3-18695 bp Feature: gene Location: 19351-21543 bp Feature: RT Description: RVT_N Location: 19498-19729 bp Feature: RT Description: RVT_N Location: 19498-197 29 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19789-20416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197 89-20416 bp Feature: domain Description: GIIM Note: maturase Location: 20479-20707 bp Feature: domain Description: GIIM Note: maturase Location: 2047 9-207 07 bp Feature: gene Location: 22024-22479 bp Feature: domain Description: RpoE Location: 22138-22357 bp Feature: domain Description: RpoE Location: 22138-22357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), DUF772 (pfam05598), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RpoE (COG3343)