myRT

myRT report for GCA_009917445.1_ASM991744v1

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Seq: QZEE01000010.1 Bacterium D16-76 strain D16-76 Scaffold10_1, whole genome shotgun sequence (117149 bp)
Overview 1 RT 1: 112446-115838 bp Neighborhood of RT #1 [112446, 115838] URH1 ribokinase RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 112446-113342 bp Ori: NBK78480.1 Feature: domain Description: URH1 Location: 112461-113340 bp Feature: domain Description: URH1 Location: 1 1 2461 -1 1 3340 bp Feature: gene Location: 113361-114248 bp Ori: NBK78481.1 Feature: domain Description: ribokinase Location: 113370-114216 bp Feature: domain Description: ribokinase Location: 1 1 3370-1 1 421 6 bp Feature: gene Location: 114274-114805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114280-114349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4280-1 1 4349 bp Feature: domain Description: GIIM Note: maturase Location: 114403-114637 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 4403-1 1 4637 bp Feature: gene Location: 115250-115450 bp Feature: domain Description: DDE_Tnp_1 Location: 115262-115382 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 5262-1 1 5382 bp Feature: gene Location: 115635-115838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT URH1 (COG1957), ribokinase (PTZ00292), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609)

Seq: QZEE01000002.1 Bacterium D16-76 strain D16-76 Scaffold2_1, whole genome shotgun sequence (180044 bp)
Overview 1 RT 1: 19061-22898 bp Neighborhood of RT #1 [19061, 22898] ABC_trans_CmpB RVT-DGRs Feature: gene Location: 19061-19498 bp Ori: NBK77266.1 Feature: domain Description: ABC_trans_CmpB Location: 19142-19421 bp Feature: domain Description: ABC_trans_CmpB Location: 19142 -1942 1 bp Feature: gene Location: 19544-20134 bp Feature: gene Location: 20346-21491 bp Ori: NBK77268.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20577-21165 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 0577-2 1165 bp Feature: gene Location: 22002-22898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_trans_CmpB (pfam06541), RVT-DGRs

Seq: QZEE01000019.1 Bacterium D16-76 strain D16-76 Scaffold19_1, whole genome shotgun sequence (72453 bp)
Overview 1 RT 1: 64976-69890 bp Neighborhood of RT #1 [64976, 69898] BcsQ Recombinase RVT-GII Intron_maturas2 HNHc BcsQ Feature: gene Location: 64976-65761 bp Ori: NBK79322.1 Feature: domain Description: BcsQ Location: 64988-65756 bp Feature: domain Description: BcsQ Location: 64988-65756 bp Feature: gene Location: 65804-66169 bp Ori: NBK79323.1 Feature: domain Description: Recombinase Location: 65957-66119 bp Feature: domain Description: Recombinase Location: 65957-66119 bp Feature: gene Location: 66305-67996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66479-67292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66479-67292 bp Feature: domain Description: Intron_maturas2 Location: 67421-67670 bp Feature: domain Description: Intron_maturas2 Location: 67421-67670 bp Feature: domain Description: HNHc Note: nucleases Location: 67823-67976 bp Feature: domain Description: HNHc Note: nucleases Location: 67823 -67976 bp Feature: gene Location: 67983-69116 bp Feature: gene Location: 69236-69898 bp Feature: domain Description: BcsQ Location: 69251-69890 bp Feature: domain Description: BcsQ Location: 69251-69890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BcsQ (COG1192), Recombinase (pfam07508), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QZEE01000031.1 Bacterium D16-76 strain D16-76 Scaffold31_1, whole genome shotgun sequence (30932 bp)
Overview 1 RT 1: 27375-30801 bp Neighborhood of RT #1 [27375, 30890] DUF4942 RVT-UNC GIIM Ape1-like_AP-endo group_II_RT_mat Feature: gene Location: 27375-27608 bp Feature: gene Location: 27615-28742 bp Ori: NBK79869.1 Feature: domain Description: DUF4942 Location: 27948-28551 bp Feature: domain Description: DUF4 94 2 Location: 2794 8-28551 bp Feature: gene Location: 28739-29296 bp Ori: NBK79870.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 28778-28910 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 28778-28910 bp Feature: domain Description: GIIM Note: maturase Location: 28973-29198 bp Feature: domain Description: GIIM Note: maturase Location: 28973-29198 bp Feature: gene Location: 29175-30890 bp Ori: NBK79871.1 Gene: xth Feature: domain Description: Ape1-like_AP-endo Location: 29178-29919 bp Feature: domain Description: Ape1-like_AP-endo Location: 29178-29919 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 30162-30801 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 30162-30801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4942 (pfam13708), RVT-GII/RVT-CRISPR/RVT-UG18/RVT-UG1(RVT-UNC), GIIM (pfam08388), Ape1-like_AP-endo (cd09087), group_II_RT_mat (TIGR04416)

Seq: QZEE01000017.1 Bacterium D16-76 strain D16-76 Scaffold17_1, whole genome shotgun sequence (87063 bp)
Overview 1 RT 1: 30541-34214 bp 2 RT 2: 81680-86875 bp Neighborhood of RT #1 [30541, 34214] RVT-DGRs ChiA1_BD Neighborhood of RT #2 [81680, 86875] HisM GlnQ RVT-GII Feature: gene Location: 30541-31020 bp Feature: gene Location: 31209-31673 bp Feature: gene Location: 32049-33230 bp Ori: NBK79124.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32328-32940 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32328-32940 bp Feature: gene Location: 33191-33811 bp Ori: NBK79125.1 Feature: domain Description: ChiA1_BD Location: 33506-33632 bp Feature: domain Description: ChiA1_BD Location: 335 06-33632 bp Feature: gene Location: 33801-34214 bp Feature: gene Location: 81680-82402 bp Ori: NBK79167.1 Feature: domain Description: HisM Location: 81710-82388 bp Feature: domain Description: HisM Location: 81710-82388 bp Feature: gene Location: 82389-83111 bp Ori: NBK79168.1 Feature: domain Description: GlnQ Location: 82395-83106 bp Feature: domain Description: GlnQ Location: 82395 -83106 bp Feature: gene Location: 83433-85250 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83727-84015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83727-84015 bp Feature: gene Location: 86684-86875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ChiA1_BD (cd12214), HisM (COG0765), GlnQ (COG1126), RVT-GII

Seq: QZEE01000013.1 Bacterium D16-76 strain D16-76 Scaffold13_1, whole genome shotgun sequence (104553 bp)
Overview 1 RT 1: 36813-41016 bp Neighborhood of RT #1 [36813, 41162] Avd_like RVT-DGRs RVT-DGRs DUF4376 Feature: gene Location: 36813-37043 bp Feature: gene Location: 37040-37471 bp Ori: NBK78751.1 Feature: domain Description: Avd_like Location: 37085-37421 bp Feature: domain Description: Avd_like Location: 37085-37421 bp Feature: gene Location: 37834-38913 bp Ori: NBK78752.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38041-38230 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38041-38230 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38305-38707 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38305-38707 bp Feature: gene Location: 38959-40677 bp Feature: gene Location: 40674-41162 bp Ori: NBK78754.1 Feature: domain Description: DUF4376 Location: 40788-41016 bp Feature: domain Description: DUF4376 Location: 40788-41016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF4376 (pfam14301)