myRT

myRT report for GCA_009917455.1_ASM991745v1

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Seq: QZDS01000158.1 Bacterium 1xD8-48 strain 1xD8-48 Scaffold171_1, whole genome shotgun sequence (589 bp)
Overview 1 RT 1: 58-586 bp Neighborhood of RT #1 [58, 589] RVT-GII Feature: gene Location: 58-589 bp Ori: NBK00734.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QZDS01000044.1 Bacterium 1xD8-48 strain 1xD8-48 Scaffold44_1, whole genome shotgun sequence (33077 bp)
Overview 1 RT 1: 30872-33007 bp Neighborhood of RT #1 [30872, 33006] SR_TndX_transposase Recombinase Zn_ribbon_recom RVT-GII Feature: gene Location: 30872-31138 bp Feature: gene Location: 31265-32443 bp Feature: domain Description: SR_TndX_transposase Location: 31349-31787 bp Feature: domain Description: SR_TndX_transposase Location: 31349-31787 bp Feature: domain Description: Recombinase Location: 31889-32252 bp Feature: domain Description: Recombinase Location: 31889-32 2 52 bp Feature: domain Description: Zn_ribbon_recom Location: 32294-32444 bp Feature: domain Description: Zn_ribbon_recom Location: 32 2 94-32 444 bp Feature: gene Location: 32674-33006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32878-33007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 878-33007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII

Seq: QZDS01000052.1 Bacterium 1xD8-48 strain 1xD8-48 Scaffold52_1, whole genome shotgun sequence (18279 bp)
Overview 1 RT 1: 213-3946 bp Neighborhood of RT #1 [213, 4155] RVT-GII GIIM AAA-ATPase_like PDDEXK_9 DUF3990 Feature: gene Location: 213-1493 bp Ori: NBK00241.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423 -103 8 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1317 bp Feature: domain Description: GIIM Note: maturase Location: 1098-13 17 bp Feature: gene Location: 1730-3445 bp Ori: NBK00242.1 Feature: domain Description: AAA-ATPase_like Location: 1766-2651 bp Feature: domain Description: AAA-ATPase_like Location: 1766-2651 bp Feature: domain Description: PDDEXK_9 Location: 3134-3431 bp Feature: domain Description: PDDEXK_9 Location: 3 13 4-3 43 1 bp Feature: gene Location: 3442-4155 bp Ori: NBK00243.1 Feature: domain Description: DUF3990 Location: 3460-3946 bp Feature: domain Description: DUF3 990 Location: 3 460-3 946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), DUF3990 (pfam13151)

Seq: QZDS01000054.1 Bacterium 1xD8-48 strain 1xD8-48 Scaffold54_1, whole genome shotgun sequence (15189 bp)
Overview 1 RT 1: 207-4045 bp Neighborhood of RT #1 [207, 4670] HTH_TipAL-Mta RpoE RVT-GII TTRAP Relaxase Feature: gene Location: 207-1046 bp Ori: NBK00277.1 Feature: domain Description: HTH_TipAL-Mta Location: 216-516 bp Feature: domain Description: HTH_TipAL-Mta Location: 216-516 bp Feature: gene Location: 1188-1613 bp Feature: domain Description: RpoE Location: 1230-1608 bp Feature: domain Description: RpoE Location: 1230-1608 bp Feature: gene Location: 1619-1948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1622-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1622-194 9 bp Feature: gene Location: 2414-2617 bp Ori: NBK00278.1 Feature: domain Description: TTRAP Location: 2426-2606 bp Feature: domain Description: TTRAP Location: 24 26-2606 bp Feature: gene Location: 3298-4670 bp Feature: domain Description: Relaxase Location: 3334-4045 bp Feature: domain Description: Relaxase Location: 3334 -4 04 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_TipAL-Mta (cd01106), RpoE (COG3343), RVT-GII, TTRAP (pfam14203), Relaxase (pfam03432)

Seq: QZDS01000062.1 Bacterium 1xD8-48 strain 1xD8-48 Scaffold62_1, whole genome shotgun sequence (12155 bp)
Overview 1 RT 1: 9915-11986 bp Neighborhood of RT #1 [9915, 12066] Methyltransf_11 HxlR RVT-GII GIIM Feature: gene Location: 9915-10646 bp Ori: NBK00396.1 Feature: domain Description: Methyltransf_11 Location: 10053-10335 bp Feature: domain Description: Methyltransf_11 Location: 1005 3-10335 bp Feature: gene Location: 10845-11177 bp Ori: NBK00397.1 Feature: domain Description: HxlR Location: 10884-11172 bp Feature: domain Description: HxlR Location: 10884-11172 bp Feature: gene Location: 11431-12066 bp Ori: NBK00398.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11437-11686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11437-11686 bp Feature: domain Description: GIIM Note: maturase Location: 11767-11986 bp Feature: domain Description: GIIM Note: maturase Location: 11767-11986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Methyltransf_11 (pfam08241), HxlR (pfam01638), RVT-GII, GIIM (pfam08388)

Seq: QZDS01000143.1 Bacterium 1xD8-48 strain 1xD8-48 Scaffold149_1, whole genome shotgun sequence (789 bp)
Overview 1 RT 1: 84-537 bp Neighborhood of RT #1 [84, 755] RVT-GII GIIM Feature: gene Location: 84-755 bp Ori: NBK00720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87-252 bp Feature: domain Description: GIIM Note: maturase Location: 306-537 bp Feature: domain Description: GIIM Note: maturase Location: 306 -537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QZDS01000003.1 Bacterium 1xD8-48 strain 1xD8-48 Scaffold3_1, whole genome shotgun sequence (289111 bp)
Overview 1 RT 1: 225792-234497 bp Neighborhood of RT #1 [225792, 234631] Radical_SAM TraC-F-type RVT-GII HNHc TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Feature: gene Location: 225792-226700 bp Ori: NBJ96600.1 Feature: domain Description: Radical_SAM Location: 226110-226572 bp Feature: domain Description: Radical_SAM Location: 226110-22657 2 bp Feature: gene Location: 226697-227098 bp Ori: NBJ96601.1 Feature: domain Description: TraC-F-type Location: 226733-226967 bp Feature: domain Description: TraC-F-type Location: 2267 33-226967 bp Feature: gene Location: 227167-229092 bp Ori: NBJ96602.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227485-228217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227 485-228217 bp Feature: domain Description: HNHc Note: nucleases Location: 228832-228964 bp Feature: domain Description: HNHc Note: nucleases Location: 228832-228964 bp Feature: gene Location: 229866-230417 bp Feature: domain Description: TraC-F-type Location: 229884-230319 bp Feature: domain Description: TraC-F-type Location: 229884-230319 bp Feature: gene Location: 230488-232167 bp Ori: NBJ96603.1 Gene: ltrA Feature: domain Description: RVT_N Location: 230566-230809 bp Feature: domain Description: RVT_N Location: 230566-230809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230854-231514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230854-231514 bp Feature: domain Description: GIIM Note: maturase Location: 231568-231802 bp Feature: domain Description: GIIM Note: maturase Location: 231568-231802 bp Feature: gene Location: 232726-234279 bp Feature: domain Description: TraC-F-type Location: 233161-234274 bp Feature: domain Description: TraC-F-type Location: 233161-23427 4 bp Feature: gene Location: 234209-234631 bp Ori: NBJ96604.1 Feature: domain Description: PrgI Location: 234224-234497 bp Feature: domain Description: PrgI Location: 234224-234497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Radical_SAM (pfam04055), TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), PrgI (pfam12666)