myRT

myRT report for GCA_009917505.1_ASM991750v1

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Seq: QZDV01000007.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold7_1, whole genome shotgun sequence (176804 bp)
Overview 1 RT 1: 72398-76275 bp Neighborhood of RT #1 [72398, 76283] pfam12571 RVT-DGRs Phage_XkdX Feature: gene Location: 72398-73000 bp Ori: NBK05061.1 Feature: domain Description: pfam12571 Location: 72422-72716 bp Feature: domain Description: pfam1 2571 Location: 72422-7271 6 bp Feature: gene Location: 73001-74290 bp Feature: gene Location: 74697-75929 bp Ori: NBK05063.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74994-75612 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74994-7561 2 bp Feature: gene Location: 75865-76140 bp Feature: gene Location: 76140-76283 bp Ori: NBK05065.1 Feature: domain Description: Phage_XkdX Location: 76164-76275 bp Feature: domain Description: Phage_XkdX Location: 761 64-76275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam12571 (DUF3751;Phage tail-collar fibre protein), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QZDV01000043.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold43_1, whole genome shotgun sequence (13060 bp)
Overview 1 RT 1: 4417-10773 bp Neighborhood of RT #1 [4417, 10966] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 TraG_VirD4 RVT-GII TraG_VirD4 DUF3267 Feature: gene Location: 4417-6297 bp Ori: NBK07164.1 Feature: domain Description: SR_TndX_transposase Location: 4441-4849 bp Feature: domain Description: SR_TndX_transposase Location: 4441-4849 bp Feature: domain Description: Recombinase Location: 4948-5308 bp Feature: domain Description: Recombinase Location: 4948-5308 bp Feature: domain Description: Zn_ribbon_recom Location: 5353-5539 bp Feature: domain Description: Zn_ribbon_recom Location: 5353-5539 bp Feature: domain Description: DUF4368 Location: 5815-6010 bp Feature: domain Description: DUF4368 Location: 5815-6010 bp Feature: gene Location: 6391-6720 bp Feature: domain Description: TraG_VirD4 Location: 6406-6607 bp Feature: domain Description: TraG_VirD4 Location: 6406-6607 bp Feature: gene Location: 6858-8741 bp Ori: NBK07165.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7170-7914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7170-7914 bp Feature: gene Location: 9435-9773 bp Feature: domain Description: TraG_VirD4 Location: 9579-9765 bp Feature: domain Description: TraG_VirD4 Location: 9579-9765 bp Feature: gene Location: 10404-10966 bp Feature: domain Description: DUF3267 Location: 10593-10773 bp Feature: domain Description: DUF32 67 Location: 10593-10773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), TraG_VirD4, RVT-GII, DUF3267 (pfam11667)

Seq: QZDV01000040.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold40_1, whole genome shotgun sequence (13888 bp)
Overview 1 RT 1: 10681-13789 bp Neighborhood of RT #1 [10681, 13888] Maff2 RVT-GII HNHc Feature: gene Location: 10681-10929 bp Feature: gene Location: 11138-11271 bp Feature: domain Description: Maff2 Location: 11141-11231 bp Feature: domain Description: Maff2 Location: 11141-1123 1 bp Feature: gene Location: 12028-13888 bp Ori: NBK07129.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12355-13093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123 55-13 093 bp Feature: domain Description: HNHc Note: nucleases Location: 13627-13789 bp Feature: domain Description: HNHc Note: nucleases Location: 13 627-13 789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, HNHc (smart00507)

Seq: QZDV01000114.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold114_1, whole genome shotgun sequence (596 bp)
Overview 1 RT 1: 253-595 bp Neighborhood of RT #1 [253, 596] RVT-GII Feature: gene Location: 253-596 bp Ori: NBK07397.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520-595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520-595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QZDV01000113.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold113_1, whole genome shotgun sequence (610 bp)
Overview 1 RT 1: 1-592 bp Neighborhood of RT #1 [1, 610] RVT-GII Intron_maturas2 Feature: gene Location: 1-610 bp Ori: NBK07396.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25-229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 -229 bp Feature: domain Description: Intron_maturas2 Location: 337-592 bp Feature: domain Description: Intron_maturas2 Location: 337-5 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QZDV01000115.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold115_1, whole genome shotgun sequence (596 bp)
Overview 1 RT 1: 253-595 bp Neighborhood of RT #1 [253, 596] RVT-GII Feature: gene Location: 253-596 bp Ori: NBK07398.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520-595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520-595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QZDV01000024.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold24_1, whole genome shotgun sequence (53168 bp)
Overview 1 RT 1: 12805-18112 bp Neighborhood of RT #1 [12805, 18112] FN3 FN3 RVT-DGRs Avd_like Feature: gene Location: 12805-13296 bp Feature: gene Location: 13296-15152 bp Ori: NBK06672.1 Feature: domain Description: FN3 Location: 13974-14214 bp Feature: domain Description: FN3 Location: 1397 4-14214 bp Feature: domain Description: FN3 Location: 14271-14529 bp Feature: domain Description: FN3 Location: 1427 1-14529 bp Feature: gene Location: 15181-16392 bp Ori: NBK06673.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15376-16036 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1537 6-16036 bp Feature: gene Location: 16784-17374 bp Ori: NBK06674.1 Feature: domain Description: Avd_like Location: 17000-17270 bp Feature: domain Description: Avd_like Location: 17 000-17 27 0 bp Feature: gene Location: 17378-18112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3 (smart00060), RVT-DGRs, Avd_like (cd16376)

Seq: QZDV01000096.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold96_1, whole genome shotgun sequence (1089 bp)
Overview 1 RT 1: 89-707 bp Neighborhood of RT #1 [89, 1057] RVT-GII Intron_maturas2 Feature: gene Location: 89-1057 bp Ori: NBK07372.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131-326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131-326 bp Feature: domain Description: Intron_maturas2 Location: 416-707 bp Feature: domain Description: Intron_maturas2 Location: 416-707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QZDV01000006.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold6_1, whole genome shotgun sequence (184335 bp)
Overview 1 RT 1: 232-3799 bp Neighborhood of RT #1 [232, 3807] RVT-GII HNHc SpoVT_AbrB COG1569 Feature: gene Location: 232-2136 bp Ori: NBK04788.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547-1279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 547-1279 bp Feature: domain Description: HNHc Note: nucleases Location: 1858-2026 bp Feature: domain Description: HNHc Note: nucleases Location: 1858-2026 bp Feature: gene Location: 3131-3406 bp Ori: NBK04789.1 Feature: domain Description: SpoVT_AbrB Location: 3164-3275 bp Feature: domain Description: SpoVT_AbrB Location: 3164-3275 bp Feature: gene Location: 3403-3807 bp Ori: NBK04790.1 Feature: domain Description: COG1569 Location: 3406-3799 bp Feature: domain Description: COG1569 Location: 3406-379 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), SpoVT_AbrB (smart00966), COG1569 (Predicted nucleic acid-binding protein, contains PIN domain )

Seq: QZDV01000045.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold45_1, whole genome shotgun sequence (9812 bp)
Overview 1 RT 1: 324-2928 bp Neighborhood of RT #1 [324, 2930] LolD GIIM RVT-GII RelE Feature: gene Location: 324-443 bp Feature: domain Description: LolD Location: 327-441 bp Feature: domain Description: LolD Location: 327-441 bp Feature: gene Location: 567-932 bp Ori: NBK07179.1 Feature: domain Description: GIIM Note: maturase Location: 612-771 bp Feature: domain Description: GIIM Note: maturase Location: 612-771 bp Feature: gene Location: 929-1984 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1286-1901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1286-1901 bp Feature: gene Location: 2444-2653 bp Feature: gene Location: 2670-2930 bp Ori: NBK07181.1 Feature: domain Description: RelE Location: 2676-2928 bp Feature: domain Description: RelE Location: 2676-2928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LolD (COG1136), GIIM (pfam08388), RVT-GII, RelE (pfam06296)

Seq: QZDV01000095.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold95_1, whole genome shotgun sequence (1093 bp)
Overview 1 RT 1: 197-980 bp Neighborhood of RT #1 [197, 1093] RVT-GII Feature: gene Location: 197-1093 bp Ori: NBK07371.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QZDV01000004.1 Bacterium 1XD42-94 strain 1XD42-94 Scaffold4_1, whole genome shotgun sequence (222962 bp)
Overview 1 RT 1: 87206-90639 bp Neighborhood of RT #1 [87206, 91136] RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 87206-87589 bp Feature: gene Location: 87594-88046 bp Feature: gene Location: 88033-89127 bp Ori: NBK04449.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 88243-88903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 88243-88903 bp Feature: gene Location: 89534-90004 bp Ori: NBK04450.1 Gene: avd Feature: domain Description: Avd_like Location: 89630-89951 bp Feature: domain Description: Avd_like Location: 89630-89951 bp Feature: gene Location: 90069-91136 bp Ori: NBK04451.1 Feature: domain Description: FGE-sulfatase Location: 90327-90639 bp Feature: domain Description: FGE-sulfatase Location: 90327-90639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)