myRT

myRT report for GCA_009917555.1_ASM991755v1

Download annotations/find similar RTs

Seq: QZDX01000026.1 Bacterium 1XD21-13 strain 1XD21-13 Scaffold26_1, whole genome shotgun sequence (35103 bp)
Overview 1 RT 1: 30255-34910 bp Neighborhood of RT #1 [30255, 34910] corrinoid_protein_B12-BD COG3894 COG3894 RVT-Retrons Feature: gene Location: 30255-30896 bp Ori: NBK94132.1 Feature: domain Description: corrinoid_protein_B12-BD Location: 30279-30876 bp Feature: domain Description: corrinoid_protein_B1 2-BD Location: 30279-30876 bp Feature: gene Location: 30976-32523 bp Ori: NBK94133.1 Feature: domain Description: COG3894 Location: 31024-31210 bp Feature: domain Description: COG3894 Location: 31 024-31 21 0 bp Feature: domain Description: COG3894 Location: 31255-32500 bp Feature: domain Description: COG3894 Location: 31 255-32500 bp Feature: gene Location: 33231-33899 bp Ori: NBK94134.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33339-33663 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33339-33663 bp Feature: gene Location: 33978-34910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT corrinoid_protein_B12-BD (cd02070), COG3894 (Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain ), RVT-Retrons

Seq: QZDX01000021.1 Bacterium 1XD21-13 strain 1XD21-13 Scaffold21_1, whole genome shotgun sequence (78361 bp)
Overview 1 RT 1: 33263-37297 bp Neighborhood of RT #1 [33263, 37297] Mtd_N RVT-DGRs Phage_XkdX Feature: gene Location: 33263-33637 bp Feature: domain Description: Mtd_N Location: 33281-33401 bp Feature: domain Description: Mtd_N Location: 332 81-33401 bp Feature: gene Location: 33748-34986 bp Feature: gene Location: 35445-36785 bp Ori: NBK93846.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35709-36363 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35709-36363 bp Feature: gene Location: 36924-37076 bp Ori: NBK93847.1 Feature: domain Description: Phage_XkdX Location: 36942-37056 bp Feature: domain Description: Phage_XkdX Location: 36942 -37056 bp Feature: gene Location: 37073-37297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mtd_N (pfam18454), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QZDX01000035.1 Bacterium 1XD21-13 strain 1XD21-13 Scaffold35_1, whole genome shotgun sequence (15375 bp)
Overview 1 RT 1: 4080-9411 bp Neighborhood of RT #1 [4080, 9446] PrgI VirB4_CagE TraC-F-type RVT_N RVT-GII GIIM VirB4_CagE PhdYeFM_antitox Feature: gene Location: 4080-4445 bp Feature: domain Description: PrgI Location: 4092-4362 bp Feature: domain Description: PrgI Location: 4092-43 62 bp Feature: gene Location: 4438-5865 bp Feature: domain Description: VirB4_CagE Location: 4498-4855 bp Feature: domain Description: VirB4_CagE Location: 4498-4855 bp Feature: domain Description: TraC-F-type Location: 5317-5854 bp Feature: domain Description: TraC-F-type Location: 53 17-5854 bp Feature: gene Location: 6415-8094 bp Ori: NBK94303.1 Gene: ltrA Feature: domain Description: RVT_N Location: 6493-6736 bp Feature: domain Description: RVT_N Location: 6493 -673 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6781-7441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6781-7441 bp Feature: domain Description: GIIM Note: maturase Location: 7495-7729 bp Feature: domain Description: GIIM Note: maturase Location: 7495-7729 bp Feature: gene Location: 8042-9085 bp Ori: NBK94304.1 Feature: domain Description: VirB4_CagE Location: 8186-8954 bp Feature: domain Description: VirB4_CagE Location: 8186-8954 bp Feature: gene Location: 9204-9446 bp Ori: NBK94305.1 Feature: domain Description: PhdYeFM_antitox Location: 9231-9411 bp Feature: domain Description: PhdYeFM_antitox Location: 923 1-9411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PhdYeFM_antitox (pfam02604)

Seq: QZDX01000009.1 Bacterium 1XD21-13 strain 1XD21-13 Scaffold9_1, whole genome shotgun sequence (148505 bp)
Overview 1 RT 1: 114962-118140 bp Neighborhood of RT #1 [114962, 118196] Acetyltransf_10 FolA RVT-GII FadR Feature: gene Location: 114962-115270 bp Ori: NBK92592.1 Feature: domain Description: Acetyltransf_10 Location: 115034-115250 bp Feature: domain Description: Acetyltransf_10 Location: 115034 -115250 bp Feature: gene Location: 115304-115831 bp Ori: NBK92593.1 Feature: domain Description: FolA Location: 115313-115799 bp Feature: domain Description: FolA Location: 115313-115799 bp Feature: gene Location: 116323-116715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116578-116716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116578-116716 bp Feature: gene Location: 116719-117358 bp Feature: gene Location: 117465-118196 bp Ori: NBK92594.1 Feature: domain Description: FadR Location: 117501-118140 bp Feature: domain Description: FadR Location: 117501-11814 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), FolA (COG0262), RVT-GII, FadR (COG2186)

Seq: QZDX01000018.1 Bacterium 1XD21-13 strain 1XD21-13 Scaffold18_1, whole genome shotgun sequence (94764 bp)
Overview 1 RT 1: 35415-40757 bp Neighborhood of RT #1 [35415, 40757] ApoLp-III_like ApoLp-III_like RVT-DGRs Feature: gene Location: 35415-36530 bp Ori: NBK93602.1 Feature: domain Description: ApoLp-III_like Location: 36057-36234 bp Feature: domain Description: ApoLp-III_like Location: 3605 7-36234 bp Feature: domain Description: ApoLp-III_like Location: 36345-36420 bp Feature: domain Description: ApoLp-III_like Location: 36345 -36420 bp Feature: gene Location: 36550-38670 bp Feature: gene Location: 39048-40166 bp Ori: NBK93604.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39255-39855 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3925 5 -3985 5 bp Feature: gene Location: 40163-40459 bp Feature: gene Location: 40575-40757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ApoLp-III_like (cl21509), RVT-DGRs