myRT

myRT report for GCA_009917615.1_ASM991761v1

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Seq: QZDY01000115.1 Bacterium D16-29 strain D16-29 Scaffold115_1, whole genome shotgun sequence (5067 bp)
Overview 1 RT 1: 817-5067 bp Neighborhood of RT #1 [817, 5067] Avd_like RVT-DGRs FN3 FN3 Feature: gene Location: 817-1434 bp Feature: domain Description: Avd_like Location: 1024-1297 bp Feature: domain Description: Avd_like Location: 1 024-1 297 bp Feature: gene Location: 1474-1746 bp Feature: gene Location: 1801-3000 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1996-2656 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 996-2656 bp Feature: gene Location: 3006-4865 bp Feature: domain Description: FN3 Location: 3687-3918 bp Feature: domain Description: FN3 Location: 3687-391 8 bp Feature: domain Description: FN3 Location: 4026-4221 bp Feature: domain Description: FN3 Location: 4026-4221 bp Feature: gene Location: 4865-5067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, FN3 (smart00060), Avd_like (cd16376)

Seq: QZDY01000008.1 Bacterium D16-29 strain D16-29 Scaffold8_1, whole genome shotgun sequence (118071 bp)
Overview 1 RT 1: 94720-99858 bp Neighborhood of RT #1 [94720, 100139] HTH_XRE HN_L-whirlin_R2_like Ape1-like_AP-endo RVT_N RVT-GII OmpR AcrR Feature: gene Location: 94720-94965 bp Feature: domain Description: HTH_XRE Location: 94750-94918 bp Feature: domain Description: HTH_XRE Location: 94750-94918 bp Feature: gene Location: 95282-95620 bp Feature: domain Description: HN_L-whirlin_R2_like Location: 95390-95579 bp Feature: domain Description: HN_L-whirlin_R2 _like Location: 95390-95579 bp Feature: gene Location: 95721-98579 bp Feature: domain Description: Ape1-like_AP-endo Location: 95724-96465 bp Feature: domain Description: Ape1-like_AP-endo Location: 9572 4-96465 bp Feature: RT Description: RVT_N Location: 96522-96759 bp Feature: RT Description: RVT_N Location: 9652 2 -96759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96816-97434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96816-97434 bp Feature: gene Location: 98576-99262 bp Feature: domain Description: OmpR Location: 98603-99257 bp Feature: domain Description: OmpR Location: 98603-992 57 bp Feature: gene Location: 99483-100139 bp Feature: domain Description: AcrR Location: 99492-99858 bp Feature: domain Description: AcrR Location: 99492 -99858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), HN_L-whirlin_R2_like (cd07357), Ape1-like_AP-endo (cd09087), RVT_N (pfam13655), RVT-GII, OmpR (COG0745), AcrR (COG1309)

Seq: QZDY01000111.1 Bacterium D16-29 strain D16-29 Scaffold111_1, whole genome shotgun sequence (5757 bp)
Overview 1 RT 1: 1-5558 bp Neighborhood of RT #1 [1, 5563] ksgA 5S_RNA_mat_M5 RVT-GII GIIM YabE 3D_containing_proteins TIGR00010 Feature: gene Location: 1-659 bp Feature: domain Description: ksgA Location: 31-646 bp Feature: domain Description: ksgA Location: 3 1-646 bp Feature: gene Location: 652-1215 bp Feature: domain Description: 5S_RNA_mat_M5 Location: 661-1174 bp Feature: domain Description: 5S_RNA_mat_M5 Location: 661-1174 bp Feature: gene Location: 1432-2757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1699-2323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1699-23 23 bp Feature: domain Description: GIIM Note: maturase Location: 2368-2599 bp Feature: domain Description: GIIM Note: maturase Location: 23 68-2599 bp Feature: gene Location: 3463-4662 bp Feature: domain Description: YabE Location: 3520-4378 bp Feature: domain Description: YabE Location: 3 520-43 78 bp Feature: domain Description: 3D_containing_proteins Location: 4393-4657 bp Feature: domain Description: 3 D_containing_proteins Location: 43 93 -4657 bp Feature: gene Location: 4799-5563 bp Feature: domain Description: TIGR00010 Location: 4805-5558 bp Feature: domain Description: TIGR00010 Location: 4805-5558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ksgA (TIGR00755), TIGR00010 (hydrolase, TatD family)

Seq: QZDY01000019.1 Bacterium D16-29 strain D16-29 Scaffold19_1, whole genome shotgun sequence (56865 bp)
Overview 1 RT 1: 38473-42362 bp Neighborhood of RT #1 [38473, 42362] PRK13342 RVT-GII Intron_maturas2 HNHc MoxR Feature: gene Location: 38473-38835 bp Feature: domain Description: PRK13342 Location: 38503-38788 bp Feature: domain Description: PRK1334 2 Location: 38503-38788 bp Feature: gene Location: 39036-39283 bp Feature: gene Location: 39490-41280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39757-40570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39757-4 0570 bp Feature: domain Description: Intron_maturas2 Location: 40648-41038 bp Feature: domain Description: Intron_maturas2 Location: 4 064 8-4 1038 bp Feature: domain Description: HNHc Note: nucleases Location: 41107-41260 bp Feature: domain Description: HNHc Note: nucleases Location: 4 1107-4 1260 bp Feature: gene Location: 41397-41885 bp Feature: domain Description: MoxR Location: 41499-41874 bp Feature: domain Description: MoxR Location: 4 14 99-4 1874 bp Feature: gene Location: 42090-42362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13342 (recombination factor protein RarA; Reviewed), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MoxR (COG0714)

Seq: QZDY01000021.1 Bacterium D16-29 strain D16-29 Scaffold21_1, whole genome shotgun sequence (56086 bp)
Overview 1 RT 1: 46484-50141 bp Neighborhood of RT #1 [46484, 50215] PrgI RVT-GII Zn_ribbon_recom Mob_Pre Feature: gene Location: 46484-46624 bp Feature: domain Description: PrgI Location: 46496-46616 bp Feature: domain Description: PrgI Location: 46496-46616 bp Feature: gene Location: 46645-47069 bp Feature: gene Location: 47685-48982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47949-48321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47949-48321 bp Feature: gene Location: 49003-49518 bp Feature: domain Description: Zn_ribbon_recom Location: 49315-49480 bp Feature: domain Description: Zn_ribbon_recom Location: 49315 -49480 bp Feature: gene Location: 49685-50215 bp Feature: domain Description: Mob_Pre Location: 49691-50141 bp Feature: domain Description: Mob_Pre Location: 49691-5 0141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), RVT-GII, Zn_ribbon_recom (pfam13408), Mob_Pre (pfam01076)

Seq: QZDY01000074.1 Bacterium D16-29 strain D16-29 Scaffold74_1, whole genome shotgun sequence (13549 bp)
Overview 1 RT 1: 7079-10943 bp Neighborhood of RT #1 [7079, 10978] SR_TndX_transposase TnpW RVT-GII Barstar barnase Feature: gene Location: 7079-7216 bp Feature: domain Description: SR_TndX_transposase Location: 7085-7217 bp Feature: domain Description: SR_TndX_transposase Location: 7085-7217 bp Feature: gene Location: 7262-7474 bp Feature: domain Description: TnpW Location: 7295-7397 bp Feature: domain Description: TnpW Location: 7295-7397 bp Feature: gene Location: 8572-10325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8890-9235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8890-9235 bp Feature: gene Location: 10480-10755 bp Feature: domain Description: Barstar Location: 10495-10723 bp Feature: domain Description: Barstar Location: 10495-10723 bp Feature: gene Location: 10736-10978 bp Feature: domain Description: barnase Location: 10757-10943 bp Feature: domain Description: barnase Location: 10757-10943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Barstar (pfam01337), barnase (cd00933), SR_TndX_transposase (cd03770), TnpW (pfam14202), RVT-GII