myRT

myRT report for GCA_009917645.1_ASM991764v1

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Seq: QZEB01000079.1 Bacterium 1xD42-11 strain 1xD42-11 Scaffold79_1, whole genome shotgun sequence (14246 bp)
Overview 1 RT 1: 11254-13310 bp Neighborhood of RT #1 [11254, 13630] retropepsin_like_bacteria RVT-UG2 Feature: gene Location: 11254-11637 bp Ori: NBK73873.1 Feature: domain Description: retropepsin_like_bacteria Location: 11290-11584 bp Feature: domain Description: retropepsin_like_bacteria Location: 1 1 290-1 1 584 bp Feature: gene Location: 11634-11894 bp Feature: gene Location: 12251-13630 bp Ori: NBK73875.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 12449-13310 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 2449-1 331 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like_bacteria (cd05483), RVT-UG2

Seq: QZEB01000017.1 Bacterium 1xD42-11 strain 1xD42-11 Scaffold17_1, whole genome shotgun sequence (76486 bp)
Overview 1 RT 1: 2962-7279 bp Neighborhood of RT #1 [2962, 7296] PRK00148 RadC RVT-UG17 PRK00024 PRK13927 Feature: gene Location: 2962-3519 bp Ori: NBK71710.1 Feature: domain Description: PRK00148 Location: 2971-3511 bp Feature: domain Description: PRK00148 Location: 2 971-3511 bp Feature: gene Location: 3562-4122 bp Ori: NBK71711.1 Feature: domain Description: RadC Location: 3586-4111 bp Feature: domain Description: RadC Location: 3586-4111 bp Feature: gene Location: 4622-5851 bp Ori: NBK71712.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4862-5390 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4862 -5390 bp Feature: gene Location: 5929-6096 bp Ori: NBK71713.1 Feature: domain Description: PRK00024 Location: 5959-6091 bp Feature: domain Description: PRK0002 4 Location: 5959-6091 bp Feature: gene Location: 6274-7296 bp Ori: NBK71714.1 Feature: domain Description: PRK13927 Location: 6286-7279 bp Feature: domain Description: PRK1392 7 Location: 62 86-72 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00148 (Maf-like protein; Reviewed), RadC (pfam04002), RVT-UG17, PRK00024 (DNA repair protein RadC), PRK13927 (rod shape-determining protein MreB; Provisional)

Seq: QZEB01000029.1 Bacterium 1xD42-11 strain 1xD42-11 Scaffold29_1, whole genome shotgun sequence (50954 bp)
Overview 1 RT 1: 8332-18927 bp Neighborhood of RT #1 [8332, 18927] PRK09183 COG4584 RVT-GII RVT-GII HNHc RVT-GII HsdM Feature: gene Location: 8332-9096 bp Ori: NBK72473.1 Feature: domain Description: PRK09183 Location: 8341-9064 bp Feature: domain Description: PRK09183 Location: 83 41-9064 bp Feature: gene Location: 9099-10661 bp Ori: NBK72474.1 Feature: domain Description: COG4584 Location: 9117-9981 bp Feature: domain Description: COG4584 Location: 9117-9981 bp Feature: gene Location: 10996-12030 bp Ori: NBK72475.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11290-11989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11290-11989 bp Feature: gene Location: 12756-12971 bp Feature: gene Location: 13094-14812 bp Ori: NBK72476.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13253-13961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 253 -13 961 bp Feature: domain Description: HNHc Note: nucleases Location: 14561-14732 bp Feature: domain Description: HNHc Note: nucleases Location: 14561-1473 2 bp Feature: gene Location: 15847-17659 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16141-16531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16141-1653 1 bp Feature: gene Location: 18323-18619 bp Ori: NBK72477.1 Feature: domain Description: HsdM Location: 18341-18545 bp Feature: domain Description: HsdM Location: 183 41-18545 bp Feature: gene Location: 18619-18927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), RVT-GII, HNHc (smart00507), HsdM (COG0286)

Seq: QZEB01000058.1 Bacterium 1xD42-11 strain 1xD42-11 Scaffold58_1, whole genome shotgun sequence (26196 bp)
Overview 1 RT 1: 14254-19578 bp Neighborhood of RT #1 [14254, 19578] E1_enzyme_family PRTRC_A RVT-GII Intron_maturas2 HNHc Prok-E2_D Feature: gene Location: 14254-14691 bp Ori: NBK73465.1 Feature: domain Description: E1_enzyme_family Location: 14332-14674 bp Feature: domain Description: E1_enzyme_family Location: 14 332-14 674 bp Feature: gene Location: 14691-15659 bp Ori: NBK73466.1 Feature: domain Description: PRTRC_A Location: 15162-15549 bp Feature: domain Description: PRTRC_A Location: 15162-1554 9 bp Feature: gene Location: 15737-17542 bp Ori: NBK73467.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16037-16733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16037-16733 bp Feature: domain Description: Intron_maturas2 Location: 16787-17108 bp Feature: domain Description: Intron_maturas2 Location: 16787-17108 bp Feature: domain Description: HNHc Note: nucleases Location: 17279-17423 bp Feature: domain Description: HNHc Note: nucleases Location: 17279-174 23 bp Feature: gene Location: 18363-19070 bp Ori: NBK73468.1 Feature: domain Description: Prok-E2_D Location: 18750-19041 bp Feature: domain Description: Prok-E2_D Location: 18750-1904 1 bp Feature: gene Location: 19054-19578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT E1_enzyme_family (cl22428), PRTRC_A (TIGR03735), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Prok-E2_D (pfam14460)

Seq: QZEB01000132.1 Bacterium 1xD42-11 strain 1xD42-11 Scaffold132_1, whole genome shotgun sequence (2065 bp)
Overview 1 RT 1: 80-1820 bp Neighborhood of RT #1 [80, 1820] RVT-GII GIIM Feature: gene Location: 80-1357 bp Ori: NBK74167.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-923 bp Feature: domain Description: GIIM Note: maturase Location: 962-1199 bp Feature: domain Description: GIIM Note: maturase Location: 962-1199 bp Feature: gene Location: 1641-1820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QZEB01000061.1 Bacterium 1xD42-11 strain 1xD42-11 Scaffold61_1, whole genome shotgun sequence (24784 bp)
Overview 1 RT 1: 15288-23364 bp Neighborhood of RT #1 [15288, 23375] PLDc_Nuc_like_unchar1_2 RVT-GII HNHc DUF4158 DDE_Tnp_Tn3 IbpA Feature: gene Location: 15288-16037 bp Feature: domain Description: PLDc_Nuc_like_unchar1_2 Location: 15516-16020 bp Feature: domain Description: PLDc_Nuc_like_unchar1_2 Location: 15516 -16 020 bp Feature: gene Location: 16622-16831 bp Feature: gene Location: 17381-19198 bp Ori: NBK73545.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17681-18377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176 81-18377 bp Feature: domain Description: HNHc Note: nucleases Location: 18953-19088 bp Feature: domain Description: HNHc Note: nucleases Location: 18953-19088 bp Feature: gene Location: 19475-22447 bp Ori: NBK73546.1 Feature: domain Description: DUF4158 Location: 19484-19940 bp Feature: domain Description: DUF4158 Location: 19484-19940 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 21230-22400 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 21230-22400 bp Feature: gene Location: 22938-23375 bp Ori: NBK73547.1 Feature: domain Description: IbpA Location: 22965-23364 bp Feature: domain Description: IbpA Location: 2296 5-2336 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_Nuc_like_unchar1_2 (cd09173), RVT-GII, HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), IbpA (COG0071)

Seq: QZEB01000033.1 Bacterium 1xD42-11 strain 1xD42-11 Scaffold33_1, whole genome shotgun sequence (46556 bp)
Overview 1 RT 1: 24162-32125 bp Neighborhood of RT #1 [24162, 32253] TrkA 2a38 RVT-GII HipB ImmA Feature: gene Location: 24162-24815 bp Ori: NBK72679.1 Feature: domain Description: TrkA Location: 24168-24804 bp Feature: domain Description: TrkA Location: 24168-24804 bp Feature: gene Location: 24817-26136 bp Ori: NBK72680.1 Feature: domain Description: 2a38 Location: 24901-26047 bp Feature: domain Description: 2a38 Location: 24901-26047 bp Feature: gene Location: 27103-28912 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27400-27976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 400-27 97 6 bp Feature: gene Location: 30007-30705 bp Feature: gene Location: 31099-32253 bp Ori: NBK72682.1 Feature: domain Description: HipB Location: 31123-31486 bp Feature: domain Description: HipB Location: 31123-31486 bp Feature: domain Description: ImmA Location: 31519-32125 bp Feature: domain Description: ImmA Location: 31519-32125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrkA (COG0569), 2a38 (TIGR00933), RVT-GII, HipB (COG1396), ImmA (COG2856)