myRT

myRT report for GCA_009918885.1_ASM991888v1

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Seq: RGDB01000630.1 Acidobacteria bacterium isolate WB6_1A_302 contig_100_629, whole genome shotgun sequence (2306 bp)
Overview 1 RT 1: 12-2258 bp Neighborhood of RT #1 [12, 2306] RVT-GII GIIM CadC1 PD40 PD40 Feature: gene Location: 12-1286 bp Ori: NBO66064.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294-942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294-942 bp Feature: domain Description: GIIM Note: maturase Location: 1020-1224 bp Feature: domain Description: GIIM Note: maturase Location: 1 020-1 224 bp Feature: gene Location: 1451-2306 bp Ori: NBO66065.1 Feature: domain Description: CadC1 Location: 1469-1781 bp Feature: domain Description: CadC1 Location: 1 469-1 781 bp Feature: domain Description: PD40 Location: 2054-2147 bp Feature: domain Description: PD40 Location: 2054-21 47 bp Feature: domain Description: PD40 Location: 2177-2258 bp Feature: domain Description: PD40 Location: 21 77-2258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CadC1 (COG3710), PD40 (pfam07676)

Seq: RGDB01000117.1 Acidobacteria bacterium isolate WB6_1A_302 contig_100_116, whole genome shotgun sequence (7259 bp)
Overview 1 RT 1: 629-6733 bp Neighborhood of RT #1 [629, 7167] RNase_H RVT-GII Feature: gene Location: 629-5608 bp Ori: NBO64229.1 Feature: domain Description: RNase_H Location: 3890-4298 bp Feature: domain Description: RNase_H Location: 3890-42 98 bp Feature: gene Location: 5656-7167 bp Ori: NBO64230.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6046-6733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6046-6733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_H (pfam00075), RVT-GII

Seq: RGDB01000551.1 Acidobacteria bacterium isolate WB6_1A_302 contig_100_550, whole genome shotgun sequence (2610 bp)
Overview 1 RT 1: 36-2513 bp Neighborhood of RT #1 [36, 2536] pfam03781 RVT-DGRs Avd_like Feature: gene Location: 36-749 bp Ori: NBO65871.1 Feature: domain Description: pfam03781 Location: 54-717 bp Feature: domain Description: pfam03 781 Location: 54-717 bp Feature: gene Location: 1106-2167 bp Ori: NBO65872.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1310-1955 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13 10-1955 bp Feature: gene Location: 2057-2536 bp Ori: NBO65873.1 Gene: avd Feature: domain Description: Avd_like Location: 2204-2513 bp Feature: domain Description: Avd_like Location: 2204-2513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs, Avd_like (cd16376)

Seq: RGDB01000220.1 Acidobacteria bacterium isolate WB6_1A_302 contig_100_219, whole genome shotgun sequence (5250 bp)
Overview 1 RT 1: 1-4435 bp Neighborhood of RT #1 [1, 5244] retropepsin_like RVT-UNC RT_RNaseH_2 RNase_HI_RT_Ty3 rve Feature: gene Location: 1-2078 bp Ori: NBO64754.1 Feature: domain Description: retropepsin_like Location: 490-787 bp Feature: domain Description: retropepsin_like Location: 4 90-787 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1516-1657 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1516-1657 bp Feature: domain Description: RT_RNaseH_2 Location: 1900-2077 bp Feature: domain Description: RT_RNaseH_2 Location: 1900-2077 bp Feature: gene Location: 2112-3239 bp Feature: gene Location: 3676-5244 bp Ori: NBO64756.1 Feature: domain Description: RNase_HI_RT_Ty3 Location: 3697-3805 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 3697-3805 bp Feature: domain Description: rve Location: 4108-4435 bp Feature: domain Description: rve Location: 4 108-4 4 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-DGRs/RVT-UG20/RVT-GII(RVT-UNC), RT_RNaseH_2 (pfam17919), RNase_HI_RT_Ty3 (cd09274), rve (pfam00665)

Seq: RGDB01000671.1 Acidobacteria bacterium isolate WB6_1A_302 contig_100_670, whole genome shotgun sequence (2160 bp)
Overview 1 RT 1: 1-352 bp Neighborhood of RT #1 [1, 1847] RVT-CRISPR-like Feature: gene Location: 1-1847 bp Ori: NBO66160.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4-352 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4-35 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: RGDB01000525.1 Acidobacteria bacterium isolate WB6_1A_302 contig_100_524, whole genome shotgun sequence (2730 bp)
Overview 1 RT 1: 1-1192 bp Neighborhood of RT #1 [1, 2730] RVT-GII Feature: gene Location: 1-2730 bp Ori: NBO65806.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643-1192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 43-1192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RGDB01000180.1 Acidobacteria bacterium isolate WB6_1A_302 contig_100_179, whole genome shotgun sequence (5879 bp)
Overview 1 RT 1: 139-4804 bp Neighborhood of RT #1 [139, 5847] RVT-UNC Rnase_HI_RT_non_LTR Feature: gene Location: 139-5847 bp Ori: NBO64558.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 1534-2176 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1534-217 6 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 4411-4804 bp Feature: domain Description: Rnase_HI_RT_non_LTR Location: 4411-4804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), Rnase_HI_RT_non_LTR (cd09276)

Seq: RGDB01000284.1 Acidobacteria bacterium isolate WB6_1A_302 contig_100_283, whole genome shotgun sequence (4441 bp)
Overview 1 RT 1: 78-1700 bp Neighborhood of RT #1 [78, 1834] RVT-DGRs Avd_like YfmG Feature: gene Location: 78-1169 bp Ori: NBO65030.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 306-954 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 306-954 bp Feature: gene Location: 1159-1500 bp Ori: NBO65031.1 Gene: avd Feature: domain Description: Avd_like Location: 1168-1480 bp Feature: domain Description: Avd_like Location: 1168 -148 0 bp Feature: gene Location: 1583-1834 bp Ori: NBO65032.1 Feature: domain Description: YfmG Location: 1592-1700 bp Feature: domain Description: YfmG Location: 1592-1700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: RGDB01001015.1 Acidobacteria bacterium isolate WB6_1A_302 contig_100_1014, whole genome shotgun sequence (1290 bp)
Overview 1 RT 1: 1-985 bp Neighborhood of RT #1 [1, 1290] RVT-UNC RVT_1 Feature: gene Location: 1-1290 bp Ori: NBO66767.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 253-523 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 253-523 bp Feature: domain Description: RVT_1 Location: 679-985 bp Feature: domain Description: RVT_1 Location: 679 -9 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28b/RVT-GII/RVT-CRISPR(RVT-UNC), RVT_1 (pfam00078)

Seq: RGDB01001156.1 Acidobacteria bacterium isolate WB6_1A_302 contig_100_1155, whole genome shotgun sequence (1140 bp)
Overview 1 RT 1: 5-1129 bp Neighborhood of RT #1 [5, 1129] RVT-UNC Feature: gene Location: 5-703 bp Ori: NBO66980.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 251-521 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 251-521 bp Feature: gene Location: 917-1129 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs/RVT-GII/RVT-CRISPR/RVT-UG3(RVT-UNC)