myRT

myRT report for GCA_009928445.1_ASM992844v1

Download annotations/find similar RTs

Seq: JAABNO010000081.1 Clostridium sp. C8-1-8 NODE_2604_length_662_cov_487.079077, whole genome shotgun sequence (662 bp)
Overview 1 RT 1: 1-646 bp Neighborhood of RT #1 [1, 660] RVT-GII GIIM Feature: gene Location: 1-660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19-406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9-406 bp Feature: domain Description: GIIM Note: maturase Location: 541-646 bp Feature: domain Description: GIIM Note: maturase Location: 541 -646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAABNO010000027.1 Clostridium sp. C8-1-8 NODE_27_length_68869_cov_283.597960, whole genome shotgun sequence (68869 bp)
Overview 1 RT 1: 1165-5035 bp Neighborhood of RT #1 [1165, 5055] ChW ChW Big_7 RVT-GII DUF2380 Gmx_para_CXXCG Feature: gene Location: 1165-2589 bp Feature: domain Description: ChW Location: 1216-1351 bp Feature: domain Description: ChW Location: 12 16-1351 bp Feature: domain Description: ChW Location: 1354-1462 bp Feature: domain Description: ChW Location: 1354-1462 bp Feature: domain Description: Big_7 Location: 1471-1729 bp Feature: domain Description: Big_7 Location: 1471-172 9 bp Feature: gene Location: 2604-2972 bp Feature: gene Location: 3481-4143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3826-4141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 6-4141 bp Feature: gene Location: 4153-4455 bp Feature: domain Description: DUF2380 Location: 4177-4429 bp Feature: domain Description: DUF2 380 Location: 4177-442 9 bp Feature: gene Location: 4468-5055 bp Feature: domain Description: Gmx_para_CXXCG Location: 4840-5035 bp Feature: domain Description: Gmx_para_CXXCG Location: 4840-5035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChW (smart00728), Big_7 (pfam17957), RVT-GII, DUF2380 (pfam09533), Gmx_para_CXXCG (pfam09535)

Seq: JAABNO010000084.1 Clostridium sp. C8-1-8 NODE_3661_length_525_cov_884.968085, whole genome shotgun sequence (525 bp)
Overview 1 RT 1: 2-515 bp Neighborhood of RT #1 [2, 523] RVT-GII Feature: gene Location: 2-523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182-515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182-515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAABNO010000005.1 Clostridium sp. C8-1-8 NODE_5_length_268496_cov_211.715912, whole genome shotgun sequence (268496 bp)
Overview 1 RT 1: 246504-253975 bp Neighborhood of RT #1 [246504, 254304] CcmA Tra8 RVT-UG14 NucS COG0610 COG0610 Feature: gene Location: 246504-247244 bp Feature: domain Description: CcmA Location: 246525-247206 bp Feature: domain Description: CcmA Location: 24 6525-24 7206 bp Feature: gene Location: 247383-247607 bp Feature: domain Description: Tra8 Location: 247386-247593 bp Feature: domain Description: Tra8 Location: 24 7386-24 7593 bp Feature: gene Location: 247866-249470 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 248217-248574 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 24 8217-24 8574 bp Feature: gene Location: 249554-250564 bp Feature: domain Description: NucS Location: 249575-249821 bp Feature: domain Description: NucS Location: 24 9575-24 9821 bp Feature: gene Location: 251092-254304 bp Feature: domain Description: COG0610 Location: 251443-251668 bp Feature: domain Description: COG0610 Location: 2514 4 3-251668 bp Feature: domain Description: COG0610 Location: 252262-253975 bp Feature: domain Description: COG0610 Location: 252262-253975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), Tra8 (COG2826), RVT-UG14, NucS (pfam01939), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )