myRT

myRT report for GCA_009928665.1_ASM992866v1

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Seq: SACF01000004.1 Alphaproteobacteria bacterium isolate INTA.CYC.164 contig-100_36, whole genome shotgun sequence (156272 bp)
Overview 1 RT 1: 1-12450 bp Neighborhood of RT #1 [1, 13291] Propeptide_C25 Peptidase_C25_N_gingipain Peptidase_C25_C CARDB TRAP_beta Ig1_Contactin-5 PKD PKD PKD Ig2_Robo RVT-GII InsE Feature: gene Location: 1-9795 bp Ori: NCA75147.1 Feature: domain Description: Propeptide_C25 Location: 103-643 bp Feature: domain Description: Propeptide_C25 Location: 1 03-643 bp Feature: domain Description: Peptidase_C25_N_gingipain Location: 757-1903 bp Feature: domain Description: Peptidase_C25_N_gingipain Location: 757-1 903 bp Feature: domain Description: Peptidase_C25_C Location: 1933-2152 bp Feature: domain Description: Peptidase_C25_C Location: 1 933-21 52 bp Feature: domain Description: CARDB Location: 2209-2422 bp Feature: domain Description: CARDB Location: 2209-2422 bp Feature: domain Description: TRAP_beta Location: 3583-3880 bp Feature: domain Description: TRAP_beta Location: 3583-3880 bp Feature: domain Description: Ig1_Contactin-5 Location: 4897-5023 bp Feature: domain Description: Ig1 _Contactin-5 Location: 4897-5023 bp Feature: domain Description: PKD Location: 6238-6376 bp Feature: domain Description: PKD Location: 6238-6376 bp Feature: domain Description: PKD Location: 6571-6715 bp Feature: domain Description: PKD Location: 6571 -671 5 bp Feature: domain Description: PKD Location: 7066-7240 bp Feature: domain Description: PKD Location: 7066-7240 bp Feature: domain Description: Ig2_Robo Location: 7333-7465 bp Feature: domain Description: Ig2_Robo Location: 7333-7465 bp Feature: gene Location: 10208-11518 bp Ori: NCA75148.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10469-11156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0469-1 1 1 56 bp Feature: gene Location: 11726-11938 bp Feature: gene Location: 12177-13291 bp Feature: domain Description: InsE Location: 12186-12450 bp Feature: domain Description: InsE Location: 1 21 86-1 2450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Propeptide_C25 (pfam08126), Peptidase_C25_N_gingipain (cd10913), Peptidase_C25_C (pfam03785), CARDB (pfam07705), TRAP_beta (pfam05753), Ig1_Contactin-5, PKD (smart00089), Ig2_Robo, RVT-GII, InsE (COG2963)

Seq: SACF01000201.1 Alphaproteobacteria bacterium isolate INTA.CYC.164 contig-100_73910, whole genome shotgun sequence (1646 bp)
Overview 1 RT 1: 347-1514 bp Neighborhood of RT #1 [347, 1594] RVT-GII GIIM Feature: gene Location: 347-1594 bp Ori: NCA78268.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560-1229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560-12 2 9 bp Feature: domain Description: GIIM Note: maturase Location: 1346-1514 bp Feature: domain Description: GIIM Note: maturase Location: 1346-1514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SACF01000047.1 Alphaproteobacteria bacterium isolate INTA.CYC.164 contig-100_941, whole genome shotgun sequence (33618 bp)
Overview 1 RT 1: 28196-33467 bp Neighborhood of RT #1 [28196, 33547] PqqD SkfB Amidohydro_2 RVT-GII RVT-GII RVT-GII GIIM Feature: gene Location: 28196-29671 bp Ori: NCA77510.1 Feature: domain Description: PqqD Location: 28286-28451 bp Feature: domain Description: PqqD Location: 28286-28451 bp Feature: domain Description: SkfB Location: 28628-29564 bp Feature: domain Description: SkfB Location: 28628-29564 bp Feature: gene Location: 29652-30419 bp Ori: NCA77511.1 Feature: domain Description: Amidohydro_2 Location: 29934-30303 bp Feature: domain Description: Amidohydro_2 Location: 2993 4-3 03 03 bp Feature: gene Location: 32242-32532 bp Ori: NCA77512.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32245-32494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2245-3 2494 bp Feature: gene Location: 32454-32633 bp Ori: NCA77513.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32472-32622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2472-3 2622 bp Feature: gene Location: 32948-33547 bp Ori: NCA77514.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32957-33182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2957-3 3 182 bp Feature: domain Description: GIIM Note: maturase Location: 33296-33467 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 296-3 3 467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PqqD (pfam05402), SkfB (COG0535), Amidohydro_2 (pfam04909), RVT-GII, GIIM (pfam08388)