myRT

myRT report for GCA_009929155.1_ASM992915v1

Download annotations/find similar RTs

Seq: SABA01000013.1 Clostridia bacterium isolate INTA.CYC.069 contig-100_500, whole genome shotgun sequence (47438 bp)
Overview 1 RT 1: 42337-45944 bp Neighborhood of RT #1 [42337, 46081] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 42337-43509 bp Feature: gene Location: 43555-43890 bp Feature: gene Location: 44209-45228 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44419-45007 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4441 9-45007 bp Feature: gene Location: 45197-45574 bp Feature: gene Location: 45599-46081 bp Feature: domain Description: Phage_holin_4_1 Location: 45647-45944 bp Feature: domain Description: Phage_holin_4_1 Location: 45647-45944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: SABA01000116.1 Clostridia bacterium isolate INTA.CYC.069 contig-100_17595, whole genome shotgun sequence (4666 bp)
Overview 1 RT 1: 305-3374 bp Neighborhood of RT #1 [305, 3619] PT PT RVT-Retrons Feature: gene Location: 305-802 bp Feature: gene Location: 823-2763 bp Feature: domain Description: PT Location: 1870-1933 bp Feature: domain Description: PT Location: 1870-1933 bp Feature: domain Description: PT Location: 2092-2185 bp Feature: domain Description: PT Location: 2 092 -2 185 bp Feature: gene Location: 2741-3619 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2831-3374 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 831-3374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PT (pfam04886)

Seq: SABA01000486.1 Clostridia bacterium isolate INTA.CYC.069 contig-100_79569, whole genome shotgun sequence (1562 bp)
Overview 1 RT 1: 533-1562 bp Neighborhood of RT #1 [533, 1562] RVT-GII GIIM Feature: gene Location: 533-1562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 728-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 728-13 43 bp Feature: domain Description: GIIM Note: maturase Location: 1415-1562 bp Feature: domain Description: GIIM Note: maturase Location: 1415-1562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SABA01000005.1 Clostridia bacterium isolate INTA.CYC.069 contig-100_26, whole genome shotgun sequence (166254 bp)
Overview 1 RT 1: 129178-134473 bp Neighborhood of RT #1 [129178, 134473] DUF3852 RVT-GII TnpW DUF3852 Feature: gene Location: 129178-129627 bp Feature: gene Location: 129639-129806 bp Feature: domain Description: DUF3852 Location: 129720-129798 bp Feature: domain Description: DUF3852 Location: 129720-129798 bp Feature: gene Location: 129857-131737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130181-130907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130181-130907 bp Feature: domain Description: TnpW Location: 130943-131006 bp Feature: domain Description: TnpW Location: 13094 3-131006 bp Feature: gene Location: 132456-132734 bp Feature: domain Description: DUF3852 Location: 132468-132723 bp Feature: domain Description: DUF3852 Location: 1324 68-132723 bp Feature: gene Location: 132767-134473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3852 (pfam12963), RVT-GII, TnpW (pfam14202)

Seq: SABA01000102.1 Clostridia bacterium isolate INTA.CYC.069 contig-100_16035, whole genome shotgun sequence (4989 bp)
Overview 1 RT 1: 573-3922 bp Neighborhood of RT #1 [573, 4989] RVT-DGRs tape_meas_TP901 Feature: gene Location: 573-1895 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 774-1368 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 774-1368 bp Feature: gene Location: 1907-2272 bp Feature: gene Location: 2383-4989 bp Feature: domain Description: tape_meas_TP901 Location: 2875-3922 bp Feature: domain Description: tape_meas_TP901 Location: 2875 -3922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT tape_meas_TP901 (TIGR01760), RVT-DGRs

Seq: SABA01000048.1 Clostridia bacterium isolate INTA.CYC.069 contig-100_6357, whole genome shotgun sequence (9649 bp)
Overview 1 RT 1: 6338-8183 bp Neighborhood of RT #1 [6338, 8183] RVT-DGRs RT_Bac_retron_II Feature: gene Location: 6338-6646 bp Feature: gene Location: 6639-6923 bp Feature: gene Location: 6814-7941 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7030-7651 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7030-76 51 bp Feature: domain Description: RT_Bac_retron_II Location: 7690-7930 bp Feature: domain Description: RT_Bac_retron_II Location: 76 90-7930 bp Feature: gene Location: 7971-8183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, RT_Bac_retron_II (cd03487)

Seq: SABA01000375.1 Clostridia bacterium isolate INTA.CYC.069 contig-100_59662, whole genome shotgun sequence (1921 bp)
Overview 1 RT 1: 517-1888 bp Neighborhood of RT #1 [517, 1911] RVT-DGRs Phage_XkdX Feature: gene Location: 517-1596 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 733-1324 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7 33-1324 bp Feature: gene Location: 1550-1774 bp Feature: gene Location: 1774-1911 bp Feature: domain Description: Phage_XkdX Location: 1780-1888 bp Feature: domain Description: Phage_XkdX Location: 17 80-1888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs