myRT

myRT report for GCA_009929255.1_ASM992925v1

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Seq: SAAV01000128.1 Clostridia bacterium isolate INTA.CYC.064 contig-100_49557, whole genome shotgun sequence (2197 bp)
Overview 1 RT 1: 372-1569 bp Neighborhood of RT #1 [372, 1760] RVT-GII GIIM Feature: gene Location: 372-1760 bp Ori: NCB53127.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 690-1 305 bp Feature: domain Description: GIIM Note: maturase Location: 1365-1569 bp Feature: domain Description: GIIM Note: maturase Location: 1 365-1 569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SAAV01000001.1 Clostridia bacterium isolate INTA.CYC.064 contig-100_2, whole genome shotgun sequence (373558 bp)
Overview 1 RT 1: 11277-16302 bp Neighborhood of RT #1 [11277, 16302] DEDDh RVT-UG5 nitrilase recQ Feature: gene Location: 11277-11483 bp Feature: gene Location: 11651-12328 bp Ori: NCB50258.1 Feature: domain Description: DEDDh Location: 11690-12173 bp Feature: domain Description: DEDDh Location: 11690-12 173 bp Feature: gene Location: 12321-15458 bp Ori: NCB50259.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 12798-13254 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 12 798-132 54 bp Feature: domain Description: nitrilase Location: 14658-15327 bp Feature: domain Description: nitrilase Location: 14658-1532 7 bp Feature: gene Location: 15461-15925 bp Ori: NCB50260.1 Feature: domain Description: recQ Location: 15512-15908 bp Feature: domain Description: recQ Location: 15512 -15908 bp Feature: gene Location: 15997-16302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDDh (cd06127), RVT-UG5, nitrilase (cl11424), recQ (TIGR01389)

Seq: SAAV01000006.1 Clostridia bacterium isolate INTA.CYC.064 contig-100_83, whole genome shotgun sequence (108149 bp)
Overview 1 RT 1: 29-4328 bp Neighborhood of RT #1 [29, 4328] RVT-Retrons HARE-HTH Feature: gene Location: 29-277 bp Feature: gene Location: 625-2307 bp Ori: NCB51157.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 751-1351 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 751-13 51 bp Feature: gene Location: 3060-3470 bp Ori: NCB51158.1 Feature: domain Description: HARE-HTH Location: 3252-3411 bp Feature: domain Description: HARE-HTH Location: 3 252-3 411 bp Feature: gene Location: 3801-4328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HARE-HTH (pfam05066)

Seq: SAAV01000100.1 Clostridia bacterium isolate INTA.CYC.064 contig-100_27731, whole genome shotgun sequence (3350 bp)
Overview 1 RT 1: 56-2770 bp Neighborhood of RT #1 [56, 3045] FGE-sulfatase Avd_like RVT-DGRs Feature: gene Location: 56-1231 bp Ori: NCB53044.1 Feature: domain Description: FGE-sulfatase Location: 455-755 bp Feature: domain Description: FGE-sulfatase Location: 4 55-755 bp Feature: gene Location: 1337-1660 bp Ori: NCB53045.1 Feature: domain Description: Avd_like Location: 1340-1643 bp Feature: domain Description: Avd_like Location: 134 0-164 3 bp Feature: gene Location: 1711-3045 bp Ori: NCB53046.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2167-2770 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2167-2770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs