myRT

myRT report for GCA_009930305.1_ASM993030v1

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Seq: RZYM01000024.1 Bacteroidia bacterium isolate INTA.AUR.014 contig-100_935, whole genome shotgun sequence (21624 bp)
Overview 1 RT 1: 6528-10785 bp Neighborhood of RT #1 [6528, 10785] PRK08644 RVT-Retrons HTH_23 Feature: gene Location: 6528-7583 bp Feature: gene Location: 7570-8232 bp Ori: NCC99835.1 Feature: domain Description: PRK08644 Location: 7612-7891 bp Feature: domain Description: PRK08644 Location: 761 2-7891 bp Feature: gene Location: 8532-9725 bp Ori: NCC99836.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8841-9447 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8841 -9447 bp Feature: gene Location: 9925-10353 bp Ori: NCC99837.1 Feature: domain Description: HTH_23 Location: 10159-10270 bp Feature: domain Description: HTH_23 Location: 1 01 59-1 0270 bp Feature: gene Location: 10363-10785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08644 (sulfur carrier protein ThiS adenylyltransferase ThiF), RVT-Retrons, HTH_23 (pfam13384)

Seq: RZYM01000018.1 Bacteroidia bacterium isolate INTA.AUR.014 contig-100_341, whole genome shotgun sequence (36243 bp)
Overview 1 RT 1: 21305-25541 bp Neighborhood of RT #1 [21305, 25549] AbiEi_4 RVT-DGRs DUF1566 Avd_like Feature: gene Location: 21305-22027 bp Ori: NCC99699.1 Feature: domain Description: AbiEi_4 Location: 21335-21482 bp Feature: domain Description: AbiEi_4 Location: 2 1335-2 1482 bp Feature: gene Location: 22571-23359 bp Feature: gene Location: 23615-24814 bp Ori: NCC99701.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23834-24533 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 3834-2 4533 bp Feature: gene Location: 24816-25046 bp Ori: NCC99702.1 Feature: domain Description: DUF1566 Location: 24840-24954 bp Feature: domain Description: DUF1566 Location: 2 4840-2 4954 bp Feature: gene Location: 25208-25549 bp Ori: NCC99703.1 Feature: domain Description: Avd_like Location: 25235-25541 bp Feature: domain Description: Avd_like Location: 2 52 35-2 5541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEi_4 (pfam13338), RVT-DGRs, DUF1566 (pfam07603), Avd_like (cd16376)

Seq: RZYM01000086.1 Bacteroidia bacterium isolate INTA.AUR.014 contig-100_21495, whole genome shotgun sequence (2792 bp)
Overview 1 RT 1: 112-1906 bp Neighborhood of RT #1 [112, 2016] RVT-GII HNHc Feature: gene Location: 112-2016 bp Ori: NCD00279.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427-1156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427-1156 bp Feature: domain Description: HNHc Note: nucleases Location: 1738-1906 bp Feature: domain Description: HNHc Note: nucleases Location: 173 8-1906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: RZYM01000068.1 Bacteroidia bacterium isolate INTA.AUR.014 contig-100_13644, whole genome shotgun sequence (3806 bp)
Overview 1 RT 1: 478-3798 bp Neighborhood of RT #1 [478, 3806] ahpD_dom COG3177 RVT-GII Feature: gene Location: 478-1125 bp Ori: NCD00225.1 Feature: domain Description: ahpD_dom Location: 625-763 bp Feature: domain Description: ahpD_dom Location: 625-763 bp Feature: gene Location: 1848-2918 bp Ori: NCD00226.1 Feature: domain Description: COG3177 Location: 1872-2877 bp Feature: domain Description: COG3177 Location: 1872-2877 bp Feature: gene Location: 3336-3806 bp Ori: NCD00227.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3510-3798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3510-3798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ahpD_dom (TIGR00778), COG3177 (Fic family protein ), RVT-GII