myRT

myRT report for GCA_009933425.1_ASM993342v1

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Seq: NAVU01000013.1 Streptococcus agalactiae strain NNA049 173, whole genome shotgun sequence (8451 bp)
Overview 1 RT 1: 3010-7475 bp Neighborhood of RT #1 [3010, 7932] strep_his_triad strep_his_triad strep_his_triad AdcA RVT-GII Feature: gene Location: 3010-5478 bp Feature: domain Description: strep_his_triad Location: 3016-4129 bp Feature: domain Description: strep_his_triad Location: 301 6-41 29 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 4966-5410 bp Feature: domain Description: strep_his_triad Location: 4966-541 0 bp Feature: gene Location: 5491-6411 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: gene Location: 6656-7932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6860-7475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6860-7475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT strep_his_triad (TIGR01363), AdcA (cd01017), RVT-GII

Seq: NAVU01000014.1 Streptococcus agalactiae strain NNA049 174, whole genome shotgun sequence (10555 bp)
Overview 1 RT 1: 3192-10032 bp Neighborhood of RT #1 [3192, 10489] UPF0236 Peptidases_S8_C5a_Peptidase fn3_5 CHU_C RVT-GII Feature: gene Location: 3192-4525 bp Feature: domain Description: UPF0236 Location: 3222-4173 bp Feature: domain Description: UPF02 36 Location: 32 2 2 -4173 bp Feature: gene Location: 5179-8631 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 5524-6922 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 552 4-692 2 bp Feature: domain Description: fn3_5 Location: 6970-7300 bp Feature: domain Description: fn3_5 Location: 6970-7300 bp Feature: domain Description: CHU_C Location: 7636-7930 bp Feature: domain Description: CHU_C Location: 7636-7930 bp Feature: gene Location: 9213-10489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9417-10032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9417-10032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0236 (pfam06782), Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), CHU_C (pfam13585), RVT-GII

Seq: NAVU01000036.1 Streptococcus agalactiae strain NNA049 196, whole genome shotgun sequence (262307 bp)
Overview 1 RT 1: 258318-261331 bp Neighborhood of RT #1 [258318, 261788] MurE COG3442 RVT-GII Feature: gene Location: 258318-259661 bp Feature: domain Description: MurE Location: 258351-259656 bp Feature: domain Description: MurE Location: 2583 51-259656 bp Feature: gene Location: 259661-260446 bp Feature: domain Description: COG3442 Location: 259709-260435 bp Feature: domain Description: COG3 442 Location: 259709-26043 5 bp Feature: gene Location: 260512-261788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260716-261331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260716-2613 3 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurE (COG0769), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), RVT-GII

Seq: NAVU01000038.1 Streptococcus agalactiae strain NNA049 198, whole genome shotgun sequence (169659 bp)
Overview 1 RT 1: 67-4748 bp 2 RT 2: 166084-168683 bp Neighborhood of RT #1 [67, 4768] RVT-GII lipoyltrans PRK11856 lipoamide_DH Neighborhood of RT #2 [166084, 169140] YraQ YcgQ RVT-GII Feature: gene Location: 67-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: gene Location: 1924-2913 bp Feature: domain Description: lipoyltrans Location: 1939-2887 bp Feature: domain Description: lipoyltrans Location: 1939-2887 bp Feature: gene Location: 3011-4768 bp Feature: domain Description: PRK11856 Location: 3014-3362 bp Feature: domain Description: PRK11856 Location: 3014 -3362 bp Feature: domain Description: lipoamide_DH Location: 3389-4748 bp Feature: domain Description: lipoamide_DH Location: 3389-4 74 8 bp Feature: gene Location: 166084-166986 bp Feature: domain Description: YraQ Location: 166087-166984 bp Feature: domain Description: YraQ Location: 166087-166984 bp Feature: gene Location: 166986-167798 bp Feature: domain Description: YcgQ Location: 166989-167796 bp Feature: domain Description: YcgQ Location: 166989-167796 bp Feature: gene Location: 167864-169140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168068-168683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168068-168683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lipoyltrans (TIGR00545), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), RVT-GII, YraQ (COG0701), YcgQ (COG3689)

Seq: NAVU01000037.1 Streptococcus agalactiae strain NNA049 197, whole genome shotgun sequence (206074 bp)
Overview 1 RT 1: 67-4314 bp 2 RT 2: 127255-137424 bp Neighborhood of RT #1 [67, 4328] RVT-GII PRK10416 Cof Neighborhood of RT #2 [127255, 137424] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 67-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: gene Location: 1894-3504 bp Feature: domain Description: PRK10416 Location: 2179-3493 bp Feature: domain Description: PRK10416 Location: 2179-3493 bp Feature: gene Location: 3504-4328 bp Feature: domain Description: Cof Location: 3516-4314 bp Feature: domain Description: Cof Location: 35 16-4314 bp Feature: gene Location: 127255-127554 bp Feature: gene Location: 127625-128968 bp Feature: domain Description: KOG1000 Location: 127904-128219 bp Feature: domain Description: KOG1000 Location: 127904-128219 bp Feature: gene Location: 129106-130884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129367-130159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129367-13015 9 bp Feature: domain Description: Intron_maturas2 Location: 130264-130495 bp Feature: domain Description: Intron_maturas2 Location: 130264-130495 bp Feature: domain Description: HNHc Note: nucleases Location: 130660-130846 bp Feature: domain Description: HNHc Note: nucleases Location: 130660-130846 bp Feature: gene Location: 131382-136823 bp Feature: domain Description: N6_Mtase Location: 133374-133965 bp Feature: domain Description: N6_Mtase Location: 133374-133965 bp Feature: domain Description: COG4646 Location: 134559-136680 bp Feature: domain Description: COG4646 Location: 1345 5 9-136680 bp Feature: gene Location: 136873-137424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10416 (signal recognition particle-docking protein FtsY; Provisional), Cof (COG0561), RVT-GII, KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )