myRT

myRT report for GCA_009933515.1_ASM993351v1

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Seq: NAVT01000035.1 Streptococcus agalactiae strain NNA050 197, whole genome shotgun sequence (115357 bp)
Overview 1 RT 1: 110-8446 bp Neighborhood of RT #1 [110, 8446] RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 110-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 -1 1 63 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: Intron_maturas2 Location: 1 268-1 499 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: domain Description: HNHc Note: nucleases Location: 1 664-1 850 bp Feature: gene Location: 2386-7845 bp Feature: domain Description: N6_Mtase Location: 4390-4984 bp Feature: domain Description: N6_Mtase Location: 4390-4984 bp Feature: domain Description: COG4646 Location: 5575-7702 bp Feature: domain Description: COG4646 Location: 5575-7702 bp Feature: gene Location: 7895-8446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: NAVT01000011.1 Streptococcus agalactiae strain NNA050 173, whole genome shotgun sequence (46019 bp)
Overview 1 RT 1: 41882-45472 bp Neighborhood of RT #1 [41882, 45510] KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 41882-42181 bp Feature: gene Location: 42251-43594 bp Feature: domain Description: KOG1000 Location: 42530-42848 bp Feature: domain Description: KOG1000 Location: 42 530-42 848 bp Feature: gene Location: 43732-45510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43993-44785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43993-44785 bp Feature: domain Description: Intron_maturas2 Location: 44890-45121 bp Feature: domain Description: Intron_maturas2 Location: 44890-4512 1 bp Feature: domain Description: HNHc Note: nucleases Location: 45286-45472 bp Feature: domain Description: HNHc Note: nucleases Location: 452 86-45472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAVT01000012.1 Streptococcus agalactiae strain NNA050 174, whole genome shotgun sequence (8441 bp)
Overview 1 RT 1: 3010-7734 bp Neighborhood of RT #1 [3010, 7922] strep_his_triad strep_his_triad strep_his_triad AdcA RVT-GII GIIM Feature: gene Location: 3010-5478 bp Feature: domain Description: strep_his_triad Location: 3016-4129 bp Feature: domain Description: strep_his_triad Location: 3 016-4129 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 4966-5410 bp Feature: domain Description: strep_his_triad Location: 4966-5410 bp Feature: gene Location: 5491-6411 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: gene Location: 6645-7922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6849-7464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6849-7464 bp Feature: domain Description: GIIM Note: maturase Location: 7518-7734 bp Feature: domain Description: GIIM Note: maturase Location: 7518-773 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT strep_his_triad (TIGR01363), AdcA (cd01017), RVT-GII, GIIM (pfam08388)

Seq: NAVT01000037.1 Streptococcus agalactiae strain NNA050 199, whole genome shotgun sequence (50725 bp)
Overview 1 RT 1: 46397-50471 bp Neighborhood of RT #1 [46397, 50659] Cof PRK10416 RVT-GII GIIM Feature: gene Location: 46397-47221 bp Feature: domain Description: Cof Location: 46409-47207 bp Feature: domain Description: Cof Location: 4 64 09-4 7207 bp Feature: gene Location: 47221-48831 bp Feature: domain Description: PRK10416 Location: 47506-48820 bp Feature: domain Description: PRK104 16 Location: 4 7506-4 8820 bp Feature: gene Location: 49382-50659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49586-50201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 9586-50201 bp Feature: domain Description: GIIM Note: maturase Location: 50255-50471 bp Feature: domain Description: GIIM Note: maturase Location: 50255-504 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), RVT-GII, GIIM (pfam08388)

Seq: NAVT01000043.1 Streptococcus agalactiae strain NNA050 205, whole genome shotgun sequence (169678 bp)
Overview 1 RT 1: 67-2888 bp 2 RT 2: 166102-168971 bp Neighborhood of RT #1 [67, 2914] RVT-GII GIIM lipoyltrans Neighborhood of RT #2 [166102, 169159] YraQ YcgQ RVT-GII GIIM Feature: gene Location: 67-1344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: domain Description: GIIM Note: maturase Location: 940-1156 bp Feature: domain Description: GIIM Note: maturase Location: 940-115 6 bp Feature: gene Location: 1709-1894 bp Feature: gene Location: 1925-2914 bp Feature: domain Description: lipoyltrans Location: 1940-2888 bp Feature: domain Description: lipoyltrans Location: 1940-2888 bp Feature: gene Location: 166102-167004 bp Feature: domain Description: YraQ Location: 166105-167002 bp Feature: domain Description: YraQ Location: 166105 -167002 bp Feature: gene Location: 167004-167816 bp Feature: domain Description: YcgQ Location: 167007-167814 bp Feature: domain Description: YcgQ Location: 167007-167814 bp Feature: gene Location: 167882-169159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168086-168701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168086-168701 bp Feature: domain Description: GIIM Note: maturase Location: 168755-168971 bp Feature: domain Description: GIIM Note: maturase Location: 16875 5 -168971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lipoyltrans (TIGR00545), RVT-GII, GIIM (pfam08388), YraQ (COG0701), YcgQ (COG3689)

Seq: NAVT01000013.1 Streptococcus agalactiae strain NNA050 175, whole genome shotgun sequence (10556 bp)
Overview 1 RT 1: 3191-10302 bp Neighborhood of RT #1 [3191, 10490] UPF0236 Peptidases_S8_C5a_Peptidase fn3_5 CHU_C RVT-GII GIIM Feature: gene Location: 3191-4525 bp Feature: domain Description: UPF0236 Location: 3221-4349 bp Feature: domain Description: UPF0236 Location: 3221-4349 bp Feature: gene Location: 5179-8631 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 5524-6922 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 5524-6 922 bp Feature: domain Description: fn3_5 Location: 6970-7300 bp Feature: domain Description: fn3_5 Location: 6 970-7300 bp Feature: domain Description: CHU_C Location: 7636-7930 bp Feature: domain Description: CHU_C Location: 76 36 -7930 bp Feature: gene Location: 9213-10490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9417-10032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9417-10032 bp Feature: domain Description: GIIM Note: maturase Location: 10086-10302 bp Feature: domain Description: GIIM Note: maturase Location: 10086 -10302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0236 (pfam06782), Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), CHU_C (pfam13585), RVT-GII, GIIM (pfam08388)

Seq: NAVT01000020.1 Streptococcus agalactiae strain NNA050 182, whole genome shotgun sequence (74620 bp)
Overview 1 RT 1: 63810-74473 bp Neighborhood of RT #1 [63810, 74511] COG2865 PHA03411 COG4646 COG4646 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 63810-65237 bp Feature: domain Description: COG2865 Location: 63813-65232 bp Feature: domain Description: COG2865 Location: 63813-65232 bp Feature: gene Location: 65411-72281 bp Feature: domain Description: PHA03411 Location: 68900-69245 bp Feature: domain Description: PHA03411 Location: 68900-69245 bp Feature: domain Description: COG4646 Location: 69560-70295 bp Feature: domain Description: COG4646 Location: 69560-7 0295 bp Feature: domain Description: COG4646 Location: 70562-72080 bp Feature: domain Description: COG4646 Location: 7 0562-7 2080 bp Feature: gene Location: 72733-74511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72994-73786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 2994-7 37 86 bp Feature: domain Description: Intron_maturas2 Location: 73891-74122 bp Feature: domain Description: Intron_maturas2 Location: 7 3891-7 4122 bp Feature: domain Description: HNHc Note: nucleases Location: 74287-74473 bp Feature: domain Description: HNHc Note: nucleases Location: 7 4287 -7 447 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAVT01000036.1 Streptococcus agalactiae strain NNA050 198, whole genome shotgun sequence (45618 bp)
Overview 1 RT 1: 510-4872 bp 2 RT 2: 37191-45471 bp Neighborhood of RT #1 [510, 5006] RVT-GII Intron_maturas2 HNHc Helicase_C SSB_OBF Neighborhood of RT #2 [37191, 45509] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 510-2288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771-1563 bp Feature: domain Description: Intron_maturas2 Location: 1668-1899 bp Feature: domain Description: Intron_maturas2 Location: 1668 -18 99 bp Feature: domain Description: HNHc Note: nucleases Location: 2064-2250 bp Feature: domain Description: HNHc Note: nucleases Location: 2064-2250 bp Feature: gene Location: 2381-4306 bp Feature: domain Description: Helicase_C Location: 2633-2852 bp Feature: domain Description: Helicase_C Location: 2633-28 52 bp Feature: gene Location: 4347-5006 bp Feature: domain Description: SSB_OBF Location: 4602-4872 bp Feature: domain Description: SSB_OBF Location: 4602-48 72 bp Feature: gene Location: 37191-37742 bp Feature: gene Location: 37792-43233 bp Feature: domain Description: N6_Mtase Location: 39784-40375 bp Feature: domain Description: N6_Mtase Location: 3978 4-40375 bp Feature: domain Description: COG4646 Location: 40966-43090 bp Feature: domain Description: COG4646 Location: 40966-43090 bp Feature: gene Location: 43731-45509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43992-44784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43992-4478 4 bp Feature: domain Description: Intron_maturas2 Location: 44889-45120 bp Feature: domain Description: Intron_maturas2 Location: 448 8 9-45120 bp Feature: domain Description: HNHc Note: nucleases Location: 45285-45471 bp Feature: domain Description: HNHc Note: nucleases Location: 4528 5-45471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Helicase_C (pfam00271), SSB_OBF (cd04496), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: NAVT01000042.1 Streptococcus agalactiae strain NNA050 204, whole genome shotgun sequence (263322 bp)
Overview 1 RT 1: 520-3986 bp Neighborhood of RT #1 [520, 3991] RVT-GII GIIM COG3442 MurE Feature: gene Location: 520-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 724-1339 bp Feature: domain Description: GIIM Note: maturase Location: 1393-1609 bp Feature: domain Description: GIIM Note: maturase Location: 139 3-1609 bp Feature: gene Location: 1863-2648 bp Feature: domain Description: COG3442 Location: 1911-2637 bp Feature: domain Description: COG3442 Location: 19 11-2637 bp Feature: gene Location: 2648-3991 bp Feature: domain Description: MurE Location: 2681-3986 bp Feature: domain Description: MurE Location: 2681-39 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), RVT-GII, GIIM (pfam08388)

Seq: NAVT01000040.1 Streptococcus agalactiae strain NNA050 202, whole genome shotgun sequence (15111 bp)
Overview 1 RT 1: 10973-14564 bp Neighborhood of RT #1 [10973, 14602] KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 10973-11272 bp Feature: gene Location: 11343-12686 bp Feature: domain Description: KOG1000 Location: 11622-11937 bp Feature: domain Description: KOG10 00 Location: 11622-11937 bp Feature: gene Location: 12824-14602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13085-13877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13085-13877 bp Feature: domain Description: Intron_maturas2 Location: 13982-14213 bp Feature: domain Description: Intron_maturas2 Location: 13982-14213 bp Feature: domain Description: HNHc Note: nucleases Location: 14378-14564 bp Feature: domain Description: HNHc Note: nucleases Location: 14378-14564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)