myRT

myRT report for GCA_009933635.1_ASM993363v1

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Seq: NAWB01000009.1 Streptococcus agalactiae strain NNB012 128, whole genome shotgun sequence (223424 bp)
Overview 1 RT 1: 103139-106388 bp Neighborhood of RT #1 [103139, 106388] HTH_XRE RVT-GII GIIM PRK07275 PRK07275 Feature: gene Location: 103139-103498 bp Feature: domain Description: HTH_XRE Location: 103163-103325 bp Feature: domain Description: HTH_XRE Location: 1 031 63-1 03325 bp Feature: gene Location: 103483-103743 bp Feature: gene Location: 103876-105195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104176-104809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 041 76-1 04809 bp Feature: domain Description: GIIM Note: maturase Location: 104878-105100 bp Feature: domain Description: GIIM Note: maturase Location: 1 04878-1 051 00 bp Feature: gene Location: 105776-106192 bp Feature: domain Description: PRK07275 Location: 105779-106115 bp Feature: domain Description: PRK07275 Location: 1 05779-1 061 1 5 bp Feature: domain Description: PRK07275 Location: 106142-106190 bp Feature: domain Description: PRK07275 Location: 1 061 42-1 061 90 bp Feature: gene Location: 106182-106388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), PRK07275 (single-stranded DNA-binding protein; Provisional)

Seq: NAWB01000034.1 Streptococcus agalactiae strain NNB012 154, whole genome shotgun sequence (47241 bp)
Overview 1 RT 1: 110-8428 bp 2 RT 2: 42236-46694 bp Neighborhood of RT #1 [110, 8428] RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Neighborhood of RT #2 [42236, 46732] SSB_OBF HELICc RVT-GII Intron_maturas2 HNHc Feature: gene Location: 110-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1163 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: Intron_maturas2 Location: 12 68-1499 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: gene Location: 2386-7827 bp Feature: domain Description: N6_Mtase Location: 4378-4969 bp Feature: domain Description: N6_Mtase Location: 4378-4969 bp Feature: domain Description: COG4646 Location: 5560-7684 bp Feature: domain Description: COG4646 Location: 5560-7684 bp Feature: gene Location: 7877-8428 bp Feature: gene Location: 42236-42895 bp Feature: domain Description: SSB_OBF Location: 42491-42761 bp Feature: domain Description: SSB_OBF Location: 42 491-42 761 bp Feature: gene Location: 42936-44861 bp Feature: domain Description: HELICc Location: 43047-43416 bp Feature: domain Description: HELICc Location: 43047-43416 bp Feature: gene Location: 44954-46732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45215-46007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452 15-46007 bp Feature: domain Description: Intron_maturas2 Location: 46112-46343 bp Feature: domain Description: Intron_maturas2 Location: 46112 -46343 bp Feature: domain Description: HNHc Note: nucleases Location: 46508-46694 bp Feature: domain Description: HNHc Note: nucleases Location: 46508-46694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), SSB_OBF (cd04496), HELICc (smart00490)

Seq: NAWB01000037.1 Streptococcus agalactiae strain NNB012 158, whole genome shotgun sequence (59914 bp)
Overview 1 RT 1: 55776-59367 bp Neighborhood of RT #1 [55776, 59405] KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 55776-56075 bp Feature: gene Location: 56146-57489 bp Feature: domain Description: KOG1000 Location: 56425-56740 bp Feature: domain Description: KOG1000 Location: 56425-56740 bp Feature: gene Location: 57627-59405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57888-58680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57888-58680 bp Feature: domain Description: Intron_maturas2 Location: 58785-59016 bp Feature: domain Description: Intron_maturas2 Location: 58785-59016 bp Feature: domain Description: HNHc Note: nucleases Location: 59181-59367 bp Feature: domain Description: HNHc Note: nucleases Location: 59181-593 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAWB01000018.1 Streptococcus agalactiae strain NNB012 137, whole genome shotgun sequence (218486 bp)
Overview 1 RT 1: 194991-199153 bp 2 RT 2: 208170-218339 bp Neighborhood of RT #1 [194991, 199153] SSB_OBF Maff2 RVT-GII HNHc Maff2 Neighborhood of RT #2 [208170, 218377] DUF1016_N YhcG_C PHA03411 COG4646 COG4646 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 194991-195302 bp Feature: domain Description: SSB_OBF Location: 195078-195261 bp Feature: domain Description: SSB_OBF Location: 195078-195261 bp Feature: gene Location: 195306-195437 bp Feature: domain Description: Maff2 Location: 195309-195435 bp Feature: domain Description: Maff2 Location: 195309-1954 35 bp Feature: gene Location: 196160-198019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196478-197216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1964 78-197216 bp Feature: domain Description: HNHc Note: nucleases Location: 197747-197909 bp Feature: domain Description: HNHc Note: nucleases Location: 19774 7-197909 bp Feature: gene Location: 198124-198270 bp Feature: domain Description: Maff2 Location: 198172-198265 bp Feature: domain Description: Maff2 Location: 198172-198265 bp Feature: gene Location: 198290-199153 bp Feature: gene Location: 208170-209201 bp Feature: domain Description: DUF1016_N Location: 208236-208644 bp Feature: domain Description: DUF1016_N Location: 208236-20864 4 bp Feature: domain Description: YhcG_C Location: 208710-209163 bp Feature: domain Description: YhcG_C Location: 208710-209163 bp Feature: gene Location: 209283-216147 bp Feature: domain Description: PHA03411 Location: 212805-213111 bp Feature: domain Description: PHA034 11 Location: 212805-213111 bp Feature: domain Description: COG4646 Location: 213426-214158 bp Feature: domain Description: COG4 64 6 Location: 2134 26-214 158 bp Feature: domain Description: COG4646 Location: 214428-215970 bp Feature: domain Description: COG4 64 6 Location: 214 4 28-215970 bp Feature: gene Location: 216599-218377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216860-217652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216860-217652 bp Feature: domain Description: Intron_maturas2 Location: 217757-217988 bp Feature: domain Description: Intron_maturas2 Location: 217757-217988 bp Feature: domain Description: HNHc Note: nucleases Location: 218153-218339 bp Feature: domain Description: HNHc Note: nucleases Location: 218153-218339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), Maff2 (pfam12750), RVT-GII, HNHc (smart00507), DUF1016_N (pfam17761), YhcG_C, PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348)