myRT

myRT report for GCA_009933935.1_ASM993393v1

Download annotations/find similar RTs

Seq: NAWS01000005.1 Streptococcus agalactiae strain NNB007 199, whole genome shotgun sequence (8451 bp)
Overview 1 RT 1: 3010-7475 bp Neighborhood of RT #1 [3010, 7932] strep_his_triad strep_his_triad strep_his_triad AdcA RVT-GII Feature: gene Location: 3010-5478 bp Feature: domain Description: strep_his_triad Location: 3016-4129 bp Feature: domain Description: strep_his_triad Location: 301 6-41 29 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 4966-5410 bp Feature: domain Description: strep_his_triad Location: 4966-541 0 bp Feature: gene Location: 5491-6411 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: gene Location: 6656-7932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6860-7475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6860-7475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT strep_his_triad (TIGR01363), AdcA (cd01017), RVT-GII

Seq: NAWS01000033.1 Streptococcus agalactiae strain NNB007 230, whole genome shotgun sequence (169658 bp)
Overview 1 RT 1: 67-4748 bp 2 RT 2: 166083-168682 bp Neighborhood of RT #1 [67, 4768] RVT-GII lipoyltrans PRK11856 lipoamide_DH Neighborhood of RT #2 [166083, 169139] YraQ YcgQ RVT-GII Feature: gene Location: 67-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 71-886 bp Feature: gene Location: 1924-2913 bp Feature: domain Description: lipoyltrans Location: 1939-2887 bp Feature: domain Description: lipoyltrans Location: 1939-2 887 bp Feature: gene Location: 3011-4768 bp Feature: domain Description: PRK11856 Location: 3014-3362 bp Feature: domain Description: PRK11856 Location: 3014-3362 bp Feature: domain Description: lipoamide_DH Location: 3389-4748 bp Feature: domain Description: lipoamide_DH Location: 3389-4748 bp Feature: gene Location: 166083-166985 bp Feature: domain Description: YraQ Location: 166086-166983 bp Feature: domain Description: YraQ Location: 166086-166983 bp Feature: gene Location: 166985-167797 bp Feature: domain Description: YcgQ Location: 166988-167795 bp Feature: domain Description: YcgQ Location: 166988-167795 bp Feature: gene Location: 167863-169139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168067-168682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168067-168682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lipoyltrans (TIGR00545), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), RVT-GII, YraQ (COG0701), YcgQ (COG3689)

Seq: NAWS01000038.1 Streptococcus agalactiae strain NNB007 235, whole genome shotgun sequence (142417 bp)
Overview 1 RT 1: 110-8446 bp Neighborhood of RT #1 [110, 8446] RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 110-1888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 71-1163 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: Intron_maturas2 Location: 1268-1499 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: domain Description: HNHc Note: nucleases Location: 1664-1850 bp Feature: gene Location: 2386-7845 bp Feature: domain Description: N6_Mtase Location: 4390-4984 bp Feature: domain Description: N6_Mtase Location: 43 90-4984 bp Feature: domain Description: COG4646 Location: 5575-7702 bp Feature: domain Description: COG4646 Location: 5575-7702 bp Feature: gene Location: 7895-8446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: NAWS01000007.1 Streptococcus agalactiae strain NNB007 201, whole genome shotgun sequence (15117 bp)
Overview 1 RT 1: 516-4145 bp Neighborhood of RT #1 [516, 4145] RVT-GII Intron_maturas2 HNHc KOG1000 Feature: gene Location: 516-2294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1569 bp Feature: domain Description: Intron_maturas2 Location: 1674-1905 bp Feature: domain Description: Intron_maturas2 Location: 1674 -1905 bp Feature: domain Description: HNHc Note: nucleases Location: 2070-2256 bp Feature: domain Description: HNHc Note: nucleases Location: 2070-2256 bp Feature: gene Location: 2432-3775 bp Feature: domain Description: KOG1000 Location: 2711-3026 bp Feature: domain Description: KOG1000 Location: 2711-3026 bp Feature: gene Location: 3846-4145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAWS01000016.1 Streptococcus agalactiae strain NNB007 210, whole genome shotgun sequence (242078 bp)
Overview 1 RT 1: 238089-241102 bp Neighborhood of RT #1 [238089, 241559] MurE COG3442 RVT-GII Feature: gene Location: 238089-239432 bp Feature: domain Description: MurE Location: 238122-239427 bp Feature: domain Description: MurE Location: 238122-239427 bp Feature: gene Location: 239432-240217 bp Feature: domain Description: COG3442 Location: 239480-240206 bp Feature: domain Description: COG3442 Location: 239480-240206 bp Feature: gene Location: 240283-241559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240487-241102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240487-241102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurE (COG0769), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), RVT-GII

Seq: NAWS01000034.1 Streptococcus agalactiae strain NNB007 231, whole genome shotgun sequence (10555 bp)
Overview 1 RT 1: 67-7012 bp Neighborhood of RT #1 [67, 7364] RVT-GII Peptidases_S8_C5a_Peptidase fn3_5 CHU_C UPF0236 Feature: gene Location: 67-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: gene Location: 1925-5377 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 2270-3668 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 2270-36 6 8 bp Feature: domain Description: fn3_5 Location: 3716-4046 bp Feature: domain Description: fn3_5 Location: 3716 -4046 bp Feature: domain Description: CHU_C Location: 4382-4676 bp Feature: domain Description: CHU_C Location: 4382-46 76 bp Feature: gene Location: 6031-7364 bp Feature: domain Description: UPF0236 Location: 6061-7012 bp Feature: domain Description: UPF0236 Location: 6 06 1-7012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), CHU_C (pfam13585), UPF0236 (pfam06782), RVT-GII

Seq: NAWS01000032.1 Streptococcus agalactiae strain NNB007 229, whole genome shotgun sequence (118679 bp)
Overview 1 RT 1: 67-4314 bp Neighborhood of RT #1 [67, 4328] RVT-GII PRK10416 Cof Feature: gene Location: 67-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 1-886 bp Feature: gene Location: 1894-3504 bp Feature: domain Description: PRK10416 Location: 2179-3493 bp Feature: domain Description: PRK10416 Location: 217 9-3493 bp Feature: gene Location: 3504-4328 bp Feature: domain Description: Cof Location: 3516-4314 bp Feature: domain Description: Cof Location: 3516-4314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10416 (signal recognition particle-docking protein FtsY; Provisional), Cof (COG0561), RVT-GII

Seq: NAWS01000004.1 Streptococcus agalactiae strain NNB007 198, whole genome shotgun sequence (46024 bp)
Overview 1 RT 1: 41881-45471 bp Neighborhood of RT #1 [41881, 45509] KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 41881-42180 bp Feature: gene Location: 42250-43593 bp Feature: domain Description: KOG1000 Location: 42529-42847 bp Feature: domain Description: KOG1000 Location: 42529-428 47 bp Feature: gene Location: 43731-45509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43992-44784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43992-4478 4 bp Feature: domain Description: Intron_maturas2 Location: 44889-45120 bp Feature: domain Description: Intron_maturas2 Location: 448 8 9-45120 bp Feature: domain Description: HNHc Note: nucleases Location: 45285-45471 bp Feature: domain Description: HNHc Note: nucleases Location: 4528 5-45471 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAWS01000019.1 Streptococcus agalactiae strain NNB007 213, whole genome shotgun sequence (76039 bp)
Overview 1 RT 1: 67612-75892 bp Neighborhood of RT #1 [67612, 75930] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 67612-68163 bp Feature: gene Location: 68213-73654 bp Feature: domain Description: N6_Mtase Location: 70205-70796 bp Feature: domain Description: N6_Mtase Location: 70205-7079 6 bp Feature: domain Description: COG4646 Location: 71390-73511 bp Feature: domain Description: COG4646 Location: 7139 0-73511 bp Feature: gene Location: 74152-75930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74413-75205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74413-75205 bp Feature: domain Description: Intron_maturas2 Location: 75310-75541 bp Feature: domain Description: Intron_maturas2 Location: 75310-75541 bp Feature: domain Description: HNHc Note: nucleases Location: 75706-75892 bp Feature: domain Description: HNHc Note: nucleases Location: 75706-7589 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)