myRT

myRT report for GCA_009934355.1_ASM993435v1

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Seq: NAXJ01000013.1 Streptococcus agalactiae strain NNA029 contig28, whole genome shotgun sequence (8451 bp)
Overview 1 RT 1: 3010-7475 bp Neighborhood of RT #1 [3010, 7932] strep_his_triad strep_his_triad strep_his_triad AdcA RVT-GII Feature: gene Location: 3010-5478 bp Feature: domain Description: strep_his_triad Location: 3016-4129 bp Feature: domain Description: strep_his_triad Location: 301 6-41 29 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 4267-4801 bp Feature: domain Description: strep_his_triad Location: 4966-5410 bp Feature: domain Description: strep_his_triad Location: 4966-541 0 bp Feature: gene Location: 5491-6411 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: domain Description: AdcA Location: 5584-6409 bp Feature: gene Location: 6656-7932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6860-7475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6860-7475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT strep_his_triad (TIGR01363), AdcA (cd01017), RVT-GII

Seq: NAXJ01000025.1 Streptococcus agalactiae strain NNA029 contig40, whole genome shotgun sequence (116040 bp)
Overview 1 RT 1: 107595-115893 bp Neighborhood of RT #1 [107595, 115931] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107595-108146 bp Feature: gene Location: 108196-113655 bp Feature: domain Description: N6_Mtase Location: 110200-110794 bp Feature: domain Description: N6_Mtase Location: 1102 00-110794 bp Feature: domain Description: COG4646 Location: 111385-113512 bp Feature: domain Description: COG4646 Location: 111385-113512 bp Feature: gene Location: 114153-115931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114414-115206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114414-1152 06 bp Feature: domain Description: Intron_maturas2 Location: 115311-115542 bp Feature: domain Description: Intron_maturas2 Location: 115311-115542 bp Feature: domain Description: HNHc Note: nucleases Location: 115707-115893 bp Feature: domain Description: HNHc Note: nucleases Location: 115707-115893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAXJ01000028.1 Streptococcus agalactiae strain NNA029 contig43, whole genome shotgun sequence (317024 bp)
Overview 1 RT 1: 313035-316048 bp Neighborhood of RT #1 [313035, 316505] MurE COG3442 RVT-GII Feature: gene Location: 313035-314378 bp Feature: domain Description: MurE Location: 313068-314373 bp Feature: domain Description: MurE Location: 3 13 068-3 143 73 bp Feature: gene Location: 314378-315163 bp Feature: domain Description: COG3442 Location: 314426-315152 bp Feature: domain Description: COG3 442 Location: 3 14426-3 15152 bp Feature: gene Location: 315229-316505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315433-316048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1543 3 -3 16048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurE (COG0769), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), RVT-GII

Seq: NAXJ01000017.1 Streptococcus agalactiae strain NNA029 contig32, whole genome shotgun sequence (131399 bp)
Overview 1 RT 1: 516-4145 bp 2 RT 2: 127072-130876 bp Neighborhood of RT #1 [516, 4145] RVT-GII Intron_maturas2 HNHc KOG1000 Neighborhood of RT #2 [127072, 131333] Cof PRK10416 RVT-GII Feature: gene Location: 516-2294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777-1569 bp Feature: domain Description: Intron_maturas2 Location: 1674-1905 bp Feature: domain Description: Intron_maturas2 Location: 1674 -1905 bp Feature: domain Description: HNHc Note: nucleases Location: 2070-2256 bp Feature: domain Description: HNHc Note: nucleases Location: 2070-2256 bp Feature: gene Location: 2432-3775 bp Feature: domain Description: KOG1000 Location: 2711-3026 bp Feature: domain Description: KOG1000 Location: 2711-3026 bp Feature: gene Location: 3846-4145 bp Feature: gene Location: 127072-127896 bp Feature: domain Description: Cof Location: 127084-127882 bp Feature: domain Description: Cof Location: 127084 -127882 bp Feature: gene Location: 127896-129506 bp Feature: domain Description: PRK10416 Location: 128181-129495 bp Feature: domain Description: PRK104 16 Location: 128181-1294 95 bp Feature: gene Location: 130057-131333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130261-130876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130261-130876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional)

Seq: NAXJ01000012.1 Streptococcus agalactiae strain NNA029 contig27, whole genome shotgun sequence (10555 bp)
Overview 1 RT 1: 3192-10032 bp Neighborhood of RT #1 [3192, 10489] UPF0236 Peptidases_S8_C5a_Peptidase fn3_5 CHU_C RVT-GII Feature: gene Location: 3192-4525 bp Feature: domain Description: UPF0236 Location: 3222-4173 bp Feature: domain Description: UPF0236 Location: 3222-4173 bp Feature: gene Location: 5179-8631 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 5524-6922 bp Feature: domain Description: Peptidases_S8_C5 a_Peptidase Location: 5 5 24-6922 bp Feature: domain Description: fn3_5 Location: 6970-7300 bp Feature: domain Description: fn3_5 Location: 6970-7300 bp Feature: domain Description: CHU_C Location: 7636-7930 bp Feature: domain Description: CHU_C Location: 7636-7930 bp Feature: gene Location: 9213-10489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9417-10032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9417-10032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0236 (pfam06782), Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), CHU_C (pfam13585), RVT-GII

Seq: NAXJ01000031.1 Streptococcus agalactiae strain NNA029 contig46, whole genome shotgun sequence (77078 bp)
Overview 1 RT 1: 68651-76931 bp Neighborhood of RT #1 [68651, 76969] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 68651-69202 bp Feature: gene Location: 69252-74693 bp Feature: domain Description: N6_Mtase Location: 71244-71835 bp Feature: domain Description: N6 _Mtase Location: 71244-71835 bp Feature: domain Description: COG4646 Location: 72429-74550 bp Feature: domain Description: COG46 46 Location: 72429-74550 bp Feature: gene Location: 75191-76969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75452-76244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75452-76 244 bp Feature: domain Description: Intron_maturas2 Location: 76349-76580 bp Feature: domain Description: Intron_maturas2 Location: 76 349-76 580 bp Feature: domain Description: HNHc Note: nucleases Location: 76745-76931 bp Feature: domain Description: HNHc Note: nucleases Location: 76 745-76 931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAXJ01000016.1 Streptococcus agalactiae strain NNA029 contig31, whole genome shotgun sequence (38609 bp)
Overview 1 RT 1: 34466-38056 bp Neighborhood of RT #1 [34466, 38094] KOG1000 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 34466-34765 bp Feature: gene Location: 34835-36178 bp Feature: domain Description: KOG1000 Location: 35114-35432 bp Feature: domain Description: KOG1000 Location: 35114-35432 bp Feature: gene Location: 36316-38094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36577-37369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3657 7 -37 369 bp Feature: domain Description: Intron_maturas2 Location: 37474-37705 bp Feature: domain Description: Intron_maturas2 Location: 37 47 4-37 7 05 bp Feature: domain Description: HNHc Note: nucleases Location: 37870-38056 bp Feature: domain Description: HNHc Note: nucleases Location: 37 87 0-38056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NAXJ01000039.1 Streptococcus agalactiae strain NNA029 contig54, whole genome shotgun sequence (169658 bp)
Overview 1 RT 1: 67-4748 bp 2 RT 2: 166083-168682 bp Neighborhood of RT #1 [67, 4768] RVT-GII lipoyltrans PRK11856 lipoamide_DH Neighborhood of RT #2 [166083, 169139] YraQ YcgQ RVT-GII Feature: gene Location: 67-1343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271-8 8 6 bp Feature: gene Location: 1924-2913 bp Feature: domain Description: lipoyltrans Location: 1939-2887 bp Feature: domain Description: lipoyltrans Location: 1939-28 8 7 bp Feature: gene Location: 3011-4768 bp Feature: domain Description: PRK11856 Location: 3014-3362 bp Feature: domain Description: PRK118 56 Location: 3014-3362 bp Feature: domain Description: lipoamide_DH Location: 3389-4748 bp Feature: domain Description: lipoamide_DH Location: 338 9-4748 bp Feature: gene Location: 166083-166985 bp Feature: domain Description: YraQ Location: 166086-166983 bp Feature: domain Description: YraQ Location: 16608 6-16698 3 bp Feature: gene Location: 166985-167797 bp Feature: domain Description: YcgQ Location: 166988-167795 bp Feature: domain Description: YcgQ Location: 16698 8 -167795 bp Feature: gene Location: 167863-169139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168067-168682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168 067-168 68 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lipoyltrans (TIGR00545), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), RVT-GII, YraQ (COG0701), YcgQ (COG3689)